Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03916

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03915 and MPMX19_03916 are separated by 74 nucleotidesMPMX19_03916 and MPMX19_03917 overlap by 8 nucleotides MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351 _03915 MPMX19_03916: MPMX19_03916 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 194,426 to 195,076 _03916 MPMX19_03917: MPMX19_03917 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 195,069 to 196,088 _03917 MPMX19_03918: MPMX19_03918 - DNA-binding transcriptional repressor YiaJ, at 196,052 to 196,906 _03918 Position (kb) 194 195 196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 193.474 kb on + strandat 193.474 kb on + strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 194.083 kb on + strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.194 kb on + strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.233 kb on + strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.509 kb on - strand, within MPMX19_03916at 194.961 kb on + strand, within MPMX19_03916at 194.962 kb on - strand, within MPMX19_03916at 195.202 kb on + strand, within MPMX19_03917at 195.202 kb on + strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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193,474 + +0.7
193,474 + -0.2
193,475 - +0.7
193,475 - +0.2
193,475 - -0.5
193,475 - -0.2
194,083 + MPMX19_03915 0.72 -0.8
194,084 - MPMX19_03915 0.72 -0.3
194,084 - MPMX19_03915 0.72 +0.2
194,084 - MPMX19_03915 0.72 -0.0
194,194 + MPMX19_03915 0.84 -0.0
194,195 - MPMX19_03915 0.84 +1.0
194,195 - MPMX19_03915 0.84 -0.5
194,233 + MPMX19_03915 0.88 -0.5
194,234 - MPMX19_03915 0.88 +1.5
194,234 - MPMX19_03915 0.88 +0.4
194,234 - MPMX19_03915 0.88 -0.4
194,351 + +0.3
194,351 + -0.7
194,351 + +0.2
194,351 + +1.4
194,351 + -0.3
194,351 - +1.2
194,352 - -0.8
194,352 - -1.4
194,352 - -0.4
194,352 - -0.7
194,508 + MPMX19_03916 0.13 +0.7
194,508 + MPMX19_03916 0.13 +0.0
194,508 + MPMX19_03916 0.13 +0.2
194,509 - MPMX19_03916 0.13 +0.6
194,961 + MPMX19_03916 0.82 +0.3
194,962 - MPMX19_03916 0.82 -0.7
195,202 + MPMX19_03917 0.13 -1.7
195,202 + MPMX19_03917 0.13 -1.7
195,203 - MPMX19_03917 0.13 +1.8
195,203 - MPMX19_03917 0.13 -0.0
195,550 + MPMX19_03917 0.47 -1.1
195,550 + MPMX19_03917 0.47 -0.8
195,550 + MPMX19_03917 0.47 +0.3
195,550 + MPMX19_03917 0.47 -0.5
195,550 + MPMX19_03917 0.47 -0.1
195,550 + MPMX19_03917 0.47 -0.5
195,550 + MPMX19_03917 0.47 +0.0
195,550 + MPMX19_03917 0.47 -0.4
195,550 + MPMX19_03917 0.47 +0.6
195,550 + MPMX19_03917 0.47 -1.0
195,550 + MPMX19_03917 0.47 -2.3
195,550 + MPMX19_03917 0.47 +0.2
195,550 + MPMX19_03917 0.47 -0.4
195,550 + MPMX19_03917 0.47 +1.2
195,550 + MPMX19_03917 0.47 +0.2
195,550 + MPMX19_03917 0.47 +0.4
195,550 + MPMX19_03917 0.47 -3.8
195,550 + MPMX19_03917 0.47 -1.5
195,550 + MPMX19_03917 0.47 -1.3
195,550 + MPMX19_03917 0.47 -0.1
195,550 + MPMX19_03917 0.47 +0.2
195,550 + MPMX19_03917 0.47 -0.2
195,550 + MPMX19_03917 0.47 -1.2
195,551 - MPMX19_03917 0.47 -0.5
195,551 - MPMX19_03917 0.47 -0.2
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 +0.5
195,551 - MPMX19_03917 0.47 -1.5
195,551 - MPMX19_03917 0.47 -0.0
195,551 - MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 +0.2
195,551 - MPMX19_03917 0.47 -0.1
195,551 - MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 -1.7
195,551 - MPMX19_03917 0.47 +1.8
195,551 - MPMX19_03917 0.47 -1.3
195,551 - MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 +2.2
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 +0.2
195,551 - MPMX19_03917 0.47 +1.2
195,551 - MPMX19_03917 0.47 -1.0
195,551 - MPMX19_03917 0.47 -2.2
195,551 - MPMX19_03917 0.47 +0.8
195,551 - MPMX19_03917 0.47 +0.6
195,551 - MPMX19_03917 0.47 +0.1
195,551 - MPMX19_03917 0.47 -0.5
195,551 - MPMX19_03917 0.47 -0.1
195,551 - MPMX19_03917 0.47 +0.2
195,551 - MPMX19_03917 0.47 -0.2
195,551 - MPMX19_03917 0.47 -0.7
195,718 + MPMX19_03917 0.64 -0.3
195,718 + MPMX19_03917 0.64 -0.5
195,718 + MPMX19_03917 0.64 +1.8
195,718 + MPMX19_03917 0.64 -0.5
195,718 + MPMX19_03917 0.64 +1.4
195,718 + MPMX19_03917 0.64 -1.5
195,718 + MPMX19_03917 0.64 -0.2
195,718 + MPMX19_03917 0.64 -0.9
195,718 + MPMX19_03917 0.64 -1.5
195,718 + MPMX19_03917 0.64 +0.2
195,719 - MPMX19_03917 0.64 +0.8
195,719 - MPMX19_03917 0.64 -0.8
195,719 - MPMX19_03917 0.64 -0.8
195,719 - MPMX19_03917 0.64 -2.0
195,719 - MPMX19_03917 0.64 +1.1
195,719 - MPMX19_03917 0.64 -1.2
195,719 - MPMX19_03917 0.64 -1.0
195,719 - MPMX19_03917 0.64 -0.2
195,817 + MPMX19_03917 0.73 -1.0
195,817 + MPMX19_03917 0.73 -0.1
195,817 + MPMX19_03917 0.73 -1.0
195,817 + MPMX19_03917 0.73 -0.5
195,817 + MPMX19_03917 0.73 +0.2
195,817 + MPMX19_03917 0.73 -0.9
195,817 + MPMX19_03917 0.73 +1.2
195,817 + MPMX19_03917 0.73 -1.4
195,817 + MPMX19_03917 0.73 -1.7
195,817 + MPMX19_03917 0.73 -1.4
195,817 + MPMX19_03917 0.73 -0.1
195,817 + MPMX19_03917 0.73 -0.3
195,817 + MPMX19_03917 0.73 -1.2
195,817 + MPMX19_03917 0.73 +1.8
195,818 - MPMX19_03917 0.73 -0.9
195,818 - MPMX19_03917 0.73 +2.2
195,818 - MPMX19_03917 0.73 +0.3

Or see this region's nucleotide sequence