Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03891

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03889 and MPMX19_03890 are separated by 27 nucleotidesMPMX19_03890 and MPMX19_03891 are separated by 3 nucleotidesMPMX19_03891 and MPMX19_03892 are separated by 99 nucleotidesMPMX19_03892 and MPMX19_03893 are separated by 22 nucleotides MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088 _03889 MPMX19_03890: MPMX19_03890 - Riboflavin transport system permease protein RibX, at 165,116 to 165,889 _03890 MPMX19_03891: MPMX19_03891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,893 to 166,747 _03891 MPMX19_03892: MPMX19_03892 - HTH-type transcriptional repressor NanR, at 166,847 to 167,698 _03892 MPMX19_03893: MPMX19_03893 - hypothetical protein, at 167,721 to 168,119 _03893 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.530 kb on - strand, within MPMX19_03891at 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.475 kb on - strand, within MPMX19_03892at 167.503 kb on + strand, within MPMX19_03892at 167.503 kb on + strand, within MPMX19_03892at 167.504 kb on - strand, within MPMX19_03892at 167.687 kb on + strandat 167.687 kb on + strandat 167.687 kb on + strandat 167.688 kb on - strandat 167.688 kb on - strandat 167.695 kb on - strandat 167.696 kb on + strandat 167.696 kb on + strandat 167.697 kb on - strandat 167.697 kb on - strandat 167.697 kb on - strandat 167.717 kb on + strandat 167.717 kb on + strandat 167.717 kb on + strandat 167.718 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
164,946 + MPMX19_03889 0.86 +0.3
164,946 + MPMX19_03889 0.86 -1.2
164,946 + MPMX19_03889 0.86 +0.4
164,947 - MPMX19_03889 0.86 +0.8
164,947 - MPMX19_03889 0.86 +0.0
164,947 - MPMX19_03889 0.86 +0.8
165,189 + -0.9
165,189 + -1.2
165,189 + +0.2
165,189 + +0.0
165,189 + +0.2
165,189 + +1.6
165,189 + -0.4
165,189 + -0.1
165,189 + +0.8
165,189 + +0.8
165,190 - +0.8
165,190 - +0.7
165,190 - -1.8
165,190 - +0.0
165,190 - -1.0
165,190 - +0.8
165,190 - +0.3
165,612 + MPMX19_03890 0.64 -1.6
165,612 + MPMX19_03890 0.64 -0.6
165,612 + MPMX19_03890 0.64 +1.0
165,613 - MPMX19_03890 0.64 +0.4
165,613 - MPMX19_03890 0.64 +1.0
165,613 - MPMX19_03890 0.64 -0.2
165,613 - MPMX19_03890 0.64 -1.4
165,624 + MPMX19_03890 0.66 +0.2
165,624 + MPMX19_03890 0.66 -1.1
165,624 + MPMX19_03890 0.66 +1.8
165,625 - MPMX19_03890 0.66 -0.3
165,625 - MPMX19_03890 0.66 -1.9
165,625 - MPMX19_03890 0.66 -0.2
165,882 + +0.5
165,882 + +0.7
165,882 + -0.5
165,882 + -1.4
165,883 - -0.0
165,883 - -0.2
165,883 - -1.7
165,883 - +0.1
165,883 - +0.6
165,883 - -0.5
165,883 - -1.5
165,883 - -0.4
165,883 - -0.4
166,368 + MPMX19_03891 0.56 -1.9
166,368 + MPMX19_03891 0.56 -0.7
166,368 + MPMX19_03891 0.56 -0.4
166,369 - MPMX19_03891 0.56 -0.2
166,369 - MPMX19_03891 0.56 -1.1
166,529 + MPMX19_03891 0.74 +0.3
166,529 + MPMX19_03891 0.74 +0.0
166,529 + MPMX19_03891 0.74 -1.5
166,529 + MPMX19_03891 0.74 -0.8
166,529 + MPMX19_03891 0.74 -0.2
166,530 - MPMX19_03891 0.75 -1.4
166,754 + -0.1
166,754 + -0.8
166,754 + -0.3
166,754 + -0.8
166,754 + -0.3
166,953 + MPMX19_03892 0.12 -1.5
166,953 + MPMX19_03892 0.12 -1.2
166,953 + MPMX19_03892 0.12 -0.4
166,953 + MPMX19_03892 0.12 -0.1
166,953 + MPMX19_03892 0.12 -1.6
166,954 - MPMX19_03892 0.13 -1.2
166,954 - MPMX19_03892 0.13 -1.2
166,954 - MPMX19_03892 0.13 +0.6
167,456 + MPMX19_03892 0.71 -1.5
167,456 + MPMX19_03892 0.71 +0.0
167,456 + MPMX19_03892 0.71 -0.0
167,456 + MPMX19_03892 0.71 -0.6
167,456 + MPMX19_03892 0.71 -0.6
167,456 + MPMX19_03892 0.71 -1.1
167,457 - MPMX19_03892 0.72 +0.8
167,457 - MPMX19_03892 0.72 +1.8
167,457 - MPMX19_03892 0.72 -0.2
167,457 - MPMX19_03892 0.72 -0.7
167,457 - MPMX19_03892 0.72 -0.1
167,457 - MPMX19_03892 0.72 +0.6
167,457 - MPMX19_03892 0.72 -1.0
167,475 - MPMX19_03892 0.74 -0.6
167,503 + MPMX19_03892 0.77 +0.2
167,503 + MPMX19_03892 0.77 -0.4
167,504 - MPMX19_03892 0.77 +0.2
167,687 + -0.3
167,687 + +0.4
167,687 + +1.0
167,688 - +0.3
167,688 - -0.5
167,695 - -1.9
167,696 + +2.1
167,696 + -0.2
167,697 - +1.0
167,697 - -0.8
167,697 - +0.9
167,717 + -1.2
167,717 + -2.0
167,717 + +0.7
167,718 - -0.7

Or see this region's nucleotide sequence