Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03822

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03821 and MPMX19_03822 are separated by 20 nucleotidesMPMX19_03822 and MPMX19_03823 are separated by 24 nucleotidesMPMX19_03823 and MPMX19_03824 are separated by 23 nucleotides MPMX19_03821: MPMX19_03821 - Putative formate dehydrogenase, at 58,094 to 60,949 _03821 MPMX19_03822: MPMX19_03822 - Sulfur carrier protein FdhD, at 60,970 to 61,812 _03822 MPMX19_03823: MPMX19_03823 - hypothetical protein, at 61,837 to 62,064 _03823 MPMX19_03824: MPMX19_03824 - hypothetical protein, at 62,088 to 62,837 _03824 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 60.290 kb on + strand, within MPMX19_03821at 60.290 kb on + strand, within MPMX19_03821at 60.290 kb on + strand, within MPMX19_03821at 60.291 kb on - strand, within MPMX19_03821at 60.291 kb on - strand, within MPMX19_03821at 60.485 kb on + strand, within MPMX19_03821at 60.485 kb on + strand, within MPMX19_03821at 60.485 kb on + strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.486 kb on - strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.518 kb on + strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.519 kb on - strand, within MPMX19_03821at 60.557 kb on + strand, within MPMX19_03821at 60.557 kb on + strand, within MPMX19_03821at 60.557 kb on + strand, within MPMX19_03821at 60.557 kb on + strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.558 kb on - strand, within MPMX19_03821at 60.746 kb on + strandat 60.746 kb on + strandat 60.746 kb on + strandat 60.746 kb on + strandat 60.746 kb on + strandat 60.747 kb on - strandat 60.747 kb on - strandat 60.827 kb on + strandat 60.828 kb on - strandat 60.887 kb on + strandat 60.887 kb on + strandat 60.887 kb on + strandat 61.138 kb on + strand, within MPMX19_03822at 61.139 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.906 kb on + strand, within MPMX19_03823at 61.906 kb on + strand, within MPMX19_03823at 61.906 kb on + strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 62.107 kb on + strandat 62.107 kb on + strandat 62.108 kb on - strandat 62.225 kb on - strand, within MPMX19_03824at 62.225 kb on - strand, within MPMX19_03824at 62.225 kb on - strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.324 kb on - strand, within MPMX19_03824at 62.388 kb on - strand, within MPMX19_03824at 62.417 kb on + strand, within MPMX19_03824at 62.418 kb on - strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.527 kb on - strand, within MPMX19_03824at 62.527 kb on - strand, within MPMX19_03824at 62.529 kb on + strand, within MPMX19_03824at 62.529 kb on + strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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60,290 + MPMX19_03821 0.77 -0.2
60,290 + MPMX19_03821 0.77 +1.0
60,290 + MPMX19_03821 0.77 -0.5
60,291 - MPMX19_03821 0.77 -0.9
60,291 - MPMX19_03821 0.77 -0.8
60,485 + MPMX19_03821 0.84 +1.3
60,485 + MPMX19_03821 0.84 +0.0
60,485 + MPMX19_03821 0.84 +0.2
60,486 - MPMX19_03821 0.84 -0.4
60,486 - MPMX19_03821 0.84 +2.2
60,486 - MPMX19_03821 0.84 -0.9
60,486 - MPMX19_03821 0.84 +0.9
60,486 - MPMX19_03821 0.84 -1.0
60,486 - MPMX19_03821 0.84 -0.6
60,486 - MPMX19_03821 0.84 +0.4
60,518 + MPMX19_03821 0.85 +0.1
60,518 + MPMX19_03821 0.85 -0.0
60,518 + MPMX19_03821 0.85 +0.6
60,518 + MPMX19_03821 0.85 +0.0
60,518 + MPMX19_03821 0.85 -1.1
60,518 + MPMX19_03821 0.85 -1.9
60,518 + MPMX19_03821 0.85 -0.4
60,518 + MPMX19_03821 0.85 -0.2
60,519 - MPMX19_03821 0.85 +0.6
60,519 - MPMX19_03821 0.85 -1.7
60,519 - MPMX19_03821 0.85 +1.8
60,519 - MPMX19_03821 0.85 -3.3
60,519 - MPMX19_03821 0.85 -0.9
60,519 - MPMX19_03821 0.85 +0.5
60,519 - MPMX19_03821 0.85 -1.2
60,557 + MPMX19_03821 0.86 -1.4
60,557 + MPMX19_03821 0.86 -1.9
60,557 + MPMX19_03821 0.86 -0.5
60,557 + MPMX19_03821 0.86 +0.1
60,558 - MPMX19_03821 0.86 -0.7
60,558 - MPMX19_03821 0.86 -0.4
60,558 - MPMX19_03821 0.86 -0.8
60,558 - MPMX19_03821 0.86 -1.2
60,558 - MPMX19_03821 0.86 -0.7
60,558 - MPMX19_03821 0.86 +1.2
60,746 + -0.8
60,746 + -0.3
60,746 + -0.3
60,746 + -2.2
60,746 + +0.6
60,747 - -0.3
60,747 - -0.7
60,827 + -0.0
60,828 - +0.2
60,887 + +0.1
60,887 + -1.7
60,887 + -0.5
61,138 + MPMX19_03822 0.20 +0.4
61,139 - MPMX19_03822 0.20 -1.5
61,576 - MPMX19_03822 0.72 -1.7
61,576 - MPMX19_03822 0.72 -2.1
61,576 - MPMX19_03822 0.72 -1.2
61,906 + MPMX19_03823 0.30 -0.7
61,906 + MPMX19_03823 0.30 -0.2
61,906 + MPMX19_03823 0.30 -1.7
61,907 - MPMX19_03823 0.31 -0.3
61,907 - MPMX19_03823 0.31 -1.4
61,907 - MPMX19_03823 0.31 +0.2
61,907 - MPMX19_03823 0.31 +0.1
61,907 - MPMX19_03823 0.31 -0.2
61,907 - MPMX19_03823 0.31 -1.7
61,907 - MPMX19_03823 0.31 +0.8
61,907 - MPMX19_03823 0.31 -0.9
62,107 + +0.1
62,107 + -0.5
62,108 - -1.0
62,225 - MPMX19_03824 0.18 +0.1
62,225 - MPMX19_03824 0.18 -1.4
62,225 - MPMX19_03824 0.18 -1.5
62,255 + MPMX19_03824 0.22 -1.2
62,255 + MPMX19_03824 0.22 +0.2
62,255 + MPMX19_03824 0.22 -1.3
62,256 - MPMX19_03824 0.22 -0.1
62,256 - MPMX19_03824 0.22 +0.4
62,256 - MPMX19_03824 0.22 -2.0
62,257 + MPMX19_03824 0.23 -0.1
62,257 + MPMX19_03824 0.23 -0.4
62,257 + MPMX19_03824 0.23 +0.8
62,257 + MPMX19_03824 0.23 -0.6
62,258 - MPMX19_03824 0.23 -1.2
62,258 - MPMX19_03824 0.23 -0.1
62,258 - MPMX19_03824 0.23 -0.4
62,258 - MPMX19_03824 0.23 -0.7
62,323 + MPMX19_03824 0.31 -1.0
62,323 + MPMX19_03824 0.31 -0.4
62,323 + MPMX19_03824 0.31 +0.8
62,324 - MPMX19_03824 0.31 +0.8
62,388 - MPMX19_03824 0.40 -2.7
62,417 + MPMX19_03824 0.44 +0.3
62,418 - MPMX19_03824 0.44 +0.4
62,419 + MPMX19_03824 0.44 -0.1
62,419 + MPMX19_03824 0.44 -1.2
62,419 + MPMX19_03824 0.44 -0.0
62,419 + MPMX19_03824 0.44 -0.2
62,419 + MPMX19_03824 0.44 -1.6
62,419 + MPMX19_03824 0.44 +0.5
62,419 + MPMX19_03824 0.44 -0.7
62,420 - MPMX19_03824 0.44 +0.9
62,420 - MPMX19_03824 0.44 -0.2
62,420 - MPMX19_03824 0.44 -0.5
62,420 - MPMX19_03824 0.44 -0.9
62,420 - MPMX19_03824 0.44 -0.5
62,420 - MPMX19_03824 0.44 +0.4
62,526 + MPMX19_03824 0.58 +0.2
62,526 + MPMX19_03824 0.58 -0.3
62,526 + MPMX19_03824 0.58 +2.2
62,527 - MPMX19_03824 0.59 +1.2
62,527 - MPMX19_03824 0.59 -1.3
62,529 + MPMX19_03824 0.59 -1.2
62,529 + MPMX19_03824 0.59 -1.5
62,530 - MPMX19_03824 0.59 -1.0
62,530 - MPMX19_03824 0.59 +0.4
62,530 - MPMX19_03824 0.59 +0.1

Or see this region's nucleotide sequence