Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03814

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03812 and MPMX19_03813 overlap by 1 nucleotidesMPMX19_03813 and MPMX19_03814 are separated by 1 nucleotidesMPMX19_03814 and MPMX19_03815 are separated by 11 nucleotidesMPMX19_03815 and MPMX19_03816 are separated by 89 nucleotides MPMX19_03812: MPMX19_03812 - hypothetical protein, at 49,016 to 50,563 _03812 MPMX19_03813: MPMX19_03813 - hypothetical protein, at 50,563 to 51,336 _03813 MPMX19_03814: MPMX19_03814 - hypothetical protein, at 51,338 to 52,486 _03814 MPMX19_03815: MPMX19_03815 - hypothetical protein, at 52,498 to 52,992 _03815 MPMX19_03816: MPMX19_03816 - hypothetical protein, at 53,082 to 53,720 _03816 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.349 kb on + strand, within MPMX19_03812at 50.350 kb on - strand, within MPMX19_03812at 50.350 kb on - strand, within MPMX19_03812at 50.399 kb on + strand, within MPMX19_03812at 50.400 kb on - strand, within MPMX19_03812at 50.400 kb on - strand, within MPMX19_03812at 50.400 kb on - strand, within MPMX19_03812at 50.463 kb on - strandat 50.571 kb on + strandat 50.571 kb on + strandat 50.571 kb on + strandat 50.572 kb on - strandat 50.572 kb on - strandat 50.572 kb on - strandat 50.572 kb on - strandat 50.572 kb on - strandat 50.590 kb on + strandat 50.746 kb on - strand, within MPMX19_03813at 50.746 kb on - strand, within MPMX19_03813at 50.839 kb on + strand, within MPMX19_03813at 50.839 kb on + strand, within MPMX19_03813at 50.840 kb on - strand, within MPMX19_03813at 50.840 kb on - strand, within MPMX19_03813at 50.844 kb on + strand, within MPMX19_03813at 50.844 kb on + strand, within MPMX19_03813at 50.845 kb on - strand, within MPMX19_03813at 50.853 kb on + strand, within MPMX19_03813at 50.854 kb on - strand, within MPMX19_03813at 50.854 kb on - strand, within MPMX19_03813at 50.884 kb on + strand, within MPMX19_03813at 50.884 kb on + strand, within MPMX19_03813at 50.884 kb on + strand, within MPMX19_03813at 50.884 kb on + strand, within MPMX19_03813at 50.884 kb on + strand, within MPMX19_03813at 50.885 kb on - strand, within MPMX19_03813at 50.885 kb on - strand, within MPMX19_03813at 50.885 kb on - strand, within MPMX19_03813at 50.885 kb on - strand, within MPMX19_03813at 50.885 kb on - strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.935 kb on + strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.936 kb on - strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.980 kb on + strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 50.981 kb on - strand, within MPMX19_03813at 51.177 kb on + strand, within MPMX19_03813at 51.177 kb on + strand, within MPMX19_03813at 51.177 kb on + strand, within MPMX19_03813at 51.177 kb on + strand, within MPMX19_03813at 51.177 kb on - strand, within MPMX19_03813at 51.178 kb on - strand, within MPMX19_03813at 51.178 kb on - strand, within MPMX19_03813at 51.178 kb on - strand, within MPMX19_03813at 51.178 kb on - strand, within MPMX19_03813at 51.178 kb on - strand, within MPMX19_03813at 51.289 kb on + strandat 51.289 kb on + strandat 51.298 kb on + strandat 51.298 kb on + strandat 51.298 kb on + strandat 51.298 kb on + strandat 51.299 kb on - strandat 51.334 kb on + strandat 51.334 kb on + strandat 51.334 kb on + strandat 51.334 kb on + strandat 51.334 kb on + strandat 51.334 kb on + strandat 51.335 kb on - strandat 51.335 kb on - strandat 51.335 kb on - strandat 51.464 kb on + strand, within MPMX19_03814at 51.464 kb on + strand, within MPMX19_03814at 51.464 kb on + strand, within MPMX19_03814at 51.464 kb on + strand, within MPMX19_03814at 51.465 kb on - strand, within MPMX19_03814at 51.465 kb on - strand, within MPMX19_03814at 51.465 kb on - strand, within MPMX19_03814at 51.465 kb on - strand, within MPMX19_03814at 51.468 kb on - strand, within MPMX19_03814at 51.468 kb on - strand, within MPMX19_03814at 51.468 kb on - strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.998 kb on - strand, within MPMX19_03814at 51.998 kb on - strand, within MPMX19_03814at 52.076 kb on + strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.079 kb on + strand, within MPMX19_03814at 52.079 kb on + strand, within MPMX19_03814at 52.080 kb on - strand, within MPMX19_03814at 52.080 kb on - strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.184 kb on + strand, within MPMX19_03814at 52.185 kb on - strand, within MPMX19_03814at 52.185 kb on - strand, within MPMX19_03814at 52.232 kb on + strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.258 kb on + strand, within MPMX19_03814at 52.259 kb on - strand, within MPMX19_03814at 52.259 kb on - strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.363 kb on + strand, within MPMX19_03814at 52.364 kb on - strand, within MPMX19_03814at 52.386 kb on - strandat 52.386 kb on - strandat 52.386 kb on - strandat 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.673 kb on - strand, within MPMX19_03815at 52.673 kb on - strand, within MPMX19_03815at 52.708 kb on - strand, within MPMX19_03815at 52.708 kb on - strand, within MPMX19_03815at 52.757 kb on - strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.921 kb on - strand, within MPMX19_03815at 52.921 kb on - strand, within MPMX19_03815at 52.997 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.010 kb on - strandat 53.010 kb on - strandat 53.010 kb on - strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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50,349 + MPMX19_03812 0.86 -0.2
50,350 - MPMX19_03812 0.86 +1.0
50,350 - MPMX19_03812 0.86 +0.9
50,399 + MPMX19_03812 0.89 -1.1
50,400 - MPMX19_03812 0.89 +0.2
50,400 - MPMX19_03812 0.89 -2.5
50,400 - MPMX19_03812 0.89 -1.0
50,463 - +0.8
50,571 + -1.4
50,571 + -0.5
50,571 + -0.4
50,572 - -1.0
50,572 - -0.9
50,572 - -1.3
50,572 - +0.3
50,572 - -0.2
50,590 + +0.1
50,746 - MPMX19_03813 0.24 -0.4
50,746 - MPMX19_03813 0.24 +0.0
50,839 + MPMX19_03813 0.36 -0.9
50,839 + MPMX19_03813 0.36 -1.0
50,840 - MPMX19_03813 0.36 +0.3
50,840 - MPMX19_03813 0.36 -1.0
50,844 + MPMX19_03813 0.36 -1.1
50,844 + MPMX19_03813 0.36 +0.1
50,845 - MPMX19_03813 0.36 -0.0
50,853 + MPMX19_03813 0.37 -1.2
50,854 - MPMX19_03813 0.38 -1.2
50,854 - MPMX19_03813 0.38 +0.5
50,884 + MPMX19_03813 0.41 -2.6
50,884 + MPMX19_03813 0.41 -0.9
50,884 + MPMX19_03813 0.41 -0.2
50,884 + MPMX19_03813 0.41 -0.6
50,884 + MPMX19_03813 0.41 +0.0
50,885 - MPMX19_03813 0.42 +0.9
50,885 - MPMX19_03813 0.42 -0.2
50,885 - MPMX19_03813 0.42 -0.3
50,885 - MPMX19_03813 0.42 -0.8
50,885 - MPMX19_03813 0.42 +0.3
50,935 + MPMX19_03813 0.48 -0.7
50,935 + MPMX19_03813 0.48 -0.3
50,935 + MPMX19_03813 0.48 +2.8
50,935 + MPMX19_03813 0.48 -0.9
50,935 + MPMX19_03813 0.48 +0.4
50,935 + MPMX19_03813 0.48 -0.5
50,935 + MPMX19_03813 0.48 +0.0
50,936 - MPMX19_03813 0.48 +0.7
50,936 - MPMX19_03813 0.48 -0.6
50,936 - MPMX19_03813 0.48 +0.5
50,936 - MPMX19_03813 0.48 -0.9
50,936 - MPMX19_03813 0.48 -0.2
50,936 - MPMX19_03813 0.48 -1.7
50,936 - MPMX19_03813 0.48 -1.7
50,936 - MPMX19_03813 0.48 +1.0
50,936 - MPMX19_03813 0.48 -1.1
50,936 - MPMX19_03813 0.48 -0.8
50,980 + MPMX19_03813 0.54 +0.1
50,980 + MPMX19_03813 0.54 -2.1
50,980 + MPMX19_03813 0.54 +0.8
50,980 + MPMX19_03813 0.54 -1.7
50,980 + MPMX19_03813 0.54 -0.1
50,980 + MPMX19_03813 0.54 -1.9
50,980 + MPMX19_03813 0.54 -0.4
50,981 - MPMX19_03813 0.54 -1.5
50,981 - MPMX19_03813 0.54 +0.8
50,981 - MPMX19_03813 0.54 +0.6
50,981 - MPMX19_03813 0.54 -0.8
50,981 - MPMX19_03813 0.54 +0.3
50,981 - MPMX19_03813 0.54 -0.4
50,981 - MPMX19_03813 0.54 +0.3
50,981 - MPMX19_03813 0.54 -0.6
50,981 - MPMX19_03813 0.54 +0.3
50,981 - MPMX19_03813 0.54 -0.5
50,981 - MPMX19_03813 0.54 -0.6
50,981 - MPMX19_03813 0.54 +0.5
50,981 - MPMX19_03813 0.54 +0.4
50,981 - MPMX19_03813 0.54 -2.6
50,981 - MPMX19_03813 0.54 +0.3
50,981 - MPMX19_03813 0.54 +0.1
50,981 - MPMX19_03813 0.54 -0.5
50,981 - MPMX19_03813 0.54 -1.2
50,981 - MPMX19_03813 0.54 -0.5
51,177 + MPMX19_03813 0.79 +0.3
51,177 + MPMX19_03813 0.79 +0.6
51,177 + MPMX19_03813 0.79 -0.2
51,177 + MPMX19_03813 0.79 +1.1
51,177 - MPMX19_03813 0.79 -1.1
51,178 - MPMX19_03813 0.79 -0.5
51,178 - MPMX19_03813 0.79 -0.8
51,178 - MPMX19_03813 0.79 -1.8
51,178 - MPMX19_03813 0.79 -0.5
51,178 - MPMX19_03813 0.79 -0.3
51,289 + +0.8
51,289 + -0.8
51,298 + -2.0
51,298 + +0.3
51,298 + -2.1
51,298 + -1.8
51,299 - +0.1
51,334 + -0.5
51,334 + +1.2
51,334 + -0.3
51,334 + +1.8
51,334 + -1.0
51,334 + +0.0
51,335 - -1.8
51,335 - -1.4
51,335 - +0.9
51,464 + MPMX19_03814 0.11 -0.1
51,464 + MPMX19_03814 0.11 -1.9
51,464 + MPMX19_03814 0.11 -1.3
51,464 + MPMX19_03814 0.11 -1.2
51,465 - MPMX19_03814 0.11 -1.5
51,465 - MPMX19_03814 0.11 -1.0
51,465 - MPMX19_03814 0.11 -1.2
51,465 - MPMX19_03814 0.11 +0.3
51,468 - MPMX19_03814 0.11 -0.7
51,468 - MPMX19_03814 0.11 -1.0
51,468 - MPMX19_03814 0.11 -1.2
51,512 + MPMX19_03814 0.15 -0.2
51,512 + MPMX19_03814 0.15 -0.4
51,512 + MPMX19_03814 0.15 -1.5
51,512 + MPMX19_03814 0.15 +1.8
51,512 + MPMX19_03814 0.15 -1.7
51,512 + MPMX19_03814 0.15 +0.2
51,513 - MPMX19_03814 0.15 +0.1
51,513 - MPMX19_03814 0.15 +1.8
51,513 - MPMX19_03814 0.15 -0.4
51,513 - MPMX19_03814 0.15 -0.7
51,513 - MPMX19_03814 0.15 -0.5
51,636 + MPMX19_03814 0.26 -2.0
51,636 + MPMX19_03814 0.26 +0.0
51,636 + MPMX19_03814 0.26 -0.2
51,637 - MPMX19_03814 0.26 -2.3
51,637 - MPMX19_03814 0.26 +0.6
51,637 - MPMX19_03814 0.26 +0.6
51,637 - MPMX19_03814 0.26 +0.8
51,997 + MPMX19_03814 0.57 -1.9
51,997 + MPMX19_03814 0.57 -0.8
51,997 + MPMX19_03814 0.57 +1.4
51,997 + MPMX19_03814 0.57 +0.3
51,997 + MPMX19_03814 0.57 -1.5
51,998 - MPMX19_03814 0.57 +1.5
51,998 - MPMX19_03814 0.57 -2.0
52,076 + MPMX19_03814 0.64 -1.0
52,077 - MPMX19_03814 0.64 -0.4
52,077 - MPMX19_03814 0.64 -0.5
52,077 - MPMX19_03814 0.64 -0.8
52,079 + MPMX19_03814 0.64 -2.0
52,079 + MPMX19_03814 0.64 -0.8
52,080 - MPMX19_03814 0.65 +0.0
52,080 - MPMX19_03814 0.65 -1.7
52,117 + MPMX19_03814 0.68 +0.5
52,117 + MPMX19_03814 0.68 -0.1
52,117 + MPMX19_03814 0.68 -0.6
52,118 - MPMX19_03814 0.68 -1.2
52,118 - MPMX19_03814 0.68 -0.8
52,118 - MPMX19_03814 0.68 -0.0
52,118 - MPMX19_03814 0.68 -1.7
52,118 - MPMX19_03814 0.68 +0.6
52,118 - MPMX19_03814 0.68 -1.9
52,118 - MPMX19_03814 0.68 -1.5
52,118 - MPMX19_03814 0.68 +1.6
52,118 - MPMX19_03814 0.68 +0.8
52,184 + MPMX19_03814 0.74 -1.2
52,185 - MPMX19_03814 0.74 -2.1
52,185 - MPMX19_03814 0.74 +2.8
52,232 + MPMX19_03814 0.78 -2.1
52,233 - MPMX19_03814 0.78 +1.6
52,233 - MPMX19_03814 0.78 -0.3
52,233 - MPMX19_03814 0.78 +0.0
52,258 + MPMX19_03814 0.80 -0.4
52,259 - MPMX19_03814 0.80 -0.6
52,259 - MPMX19_03814 0.80 -0.7
52,361 + MPMX19_03814 0.89 -0.5
52,361 + MPMX19_03814 0.89 -0.4
52,361 + MPMX19_03814 0.89 -0.4
52,361 + MPMX19_03814 0.89 -0.5
52,361 + MPMX19_03814 0.89 -0.5
52,362 - MPMX19_03814 0.89 +0.3
52,362 - MPMX19_03814 0.89 -0.7
52,362 - MPMX19_03814 0.89 +2.5
52,363 + MPMX19_03814 0.89 -0.4
52,364 - MPMX19_03814 0.89 -0.8
52,386 - -0.9
52,386 - -0.1
52,386 - +0.5
52,558 + MPMX19_03815 0.12 +0.4
52,558 + MPMX19_03815 0.12 -1.9
52,558 + MPMX19_03815 0.12 -0.0
52,558 + MPMX19_03815 0.12 -0.2
52,558 + MPMX19_03815 0.12 +0.4
52,559 - MPMX19_03815 0.12 -0.6
52,559 - MPMX19_03815 0.12 -0.3
52,559 - MPMX19_03815 0.12 -0.9
52,559 - MPMX19_03815 0.12 -0.9
52,559 - MPMX19_03815 0.12 -0.8
52,559 - MPMX19_03815 0.12 -0.9
52,673 - MPMX19_03815 0.35 +0.4
52,673 - MPMX19_03815 0.35 -0.8
52,708 - MPMX19_03815 0.42 -0.4
52,708 - MPMX19_03815 0.42 +0.5
52,757 - MPMX19_03815 0.52 +0.8
52,920 + MPMX19_03815 0.85 -0.0
52,920 + MPMX19_03815 0.85 -0.4
52,920 + MPMX19_03815 0.85 -1.9
52,920 + MPMX19_03815 0.85 -0.5
52,920 + MPMX19_03815 0.85 +0.6
52,920 + MPMX19_03815 0.85 -0.2
52,921 - MPMX19_03815 0.85 -1.1
52,921 - MPMX19_03815 0.85 -0.4
52,997 + +3.4
53,009 + -1.0
53,009 + -0.1
53,009 + +0.8
53,009 + +0.5
53,009 + -0.2
53,009 + +0.1
53,010 - +2.0
53,010 - +0.0
53,010 - -1.7
53,058 + -0.7
53,058 + -1.9
53,058 + -0.4
53,058 + -1.0
53,058 + -0.4
53,058 + -0.5
53,058 + +0.4

Or see this region's nucleotide sequence