Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03784

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03782 and MPMX19_03783 overlap by 4 nucleotidesMPMX19_03783 and MPMX19_03784 overlap by 4 nucleotidesMPMX19_03784 and MPMX19_03785 overlap by 4 nucleotidesMPMX19_03785 and MPMX19_03786 overlap by 1 nucleotidesMPMX19_03786 and MPMX19_03787 overlap by 4 nucleotides MPMX19_03782: MPMX19_03782 - hypothetical protein, at 22,782 to 23,138 _03782 MPMX19_03783: MPMX19_03783 - hypothetical protein, at 23,135 to 23,893 _03783 MPMX19_03784: MPMX19_03784 - hypothetical protein, at 23,890 to 24,132 _03784 MPMX19_03785: MPMX19_03785 - hypothetical protein, at 24,129 to 24,392 _03785 MPMX19_03786: MPMX19_03786 - hypothetical protein, at 24,392 to 24,667 _03786 MPMX19_03787: MPMX19_03787 - hypothetical protein, at 24,664 to 25,137 _03787 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.908 kb on + strand, within MPMX19_03782at 22.909 kb on - strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.926 kb on + strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 22.927 kb on - strand, within MPMX19_03782at 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.149 kb on + strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.150 kb on - strandat 23.474 kb on + strand, within MPMX19_03783at 23.475 kb on - strand, within MPMX19_03783at 23.475 kb on - strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.731 kb on + strand, within MPMX19_03783at 23.744 kb on + strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.924 kb on - strand, within MPMX19_03784at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.922 kb on + strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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22,908 + MPMX19_03782 0.35 -0.5
22,909 - MPMX19_03782 0.36 -1.9
22,926 + MPMX19_03782 0.40 +0.9
22,926 + MPMX19_03782 0.40 -0.5
22,926 + MPMX19_03782 0.40 -2.9
22,926 + MPMX19_03782 0.40 -1.5
22,926 + MPMX19_03782 0.40 +0.5
22,926 + MPMX19_03782 0.40 -1.0
22,926 + MPMX19_03782 0.40 -1.0
22,926 + MPMX19_03782 0.40 -0.4
22,926 + MPMX19_03782 0.40 +0.2
22,926 + MPMX19_03782 0.40 -0.5
22,926 + MPMX19_03782 0.40 -0.8
22,927 - MPMX19_03782 0.41 -0.1
22,927 - MPMX19_03782 0.41 +0.1
22,927 - MPMX19_03782 0.41 -1.2
22,927 - MPMX19_03782 0.41 +0.5
22,927 - MPMX19_03782 0.41 -0.5
22,927 - MPMX19_03782 0.41 -0.1
22,927 - MPMX19_03782 0.41 -1.5
22,927 - MPMX19_03782 0.41 -0.4
22,927 - MPMX19_03782 0.41 +0.4
22,927 - MPMX19_03782 0.41 +0.8
22,927 - MPMX19_03782 0.41 -0.2
22,927 - MPMX19_03782 0.41 -1.6
22,927 - MPMX19_03782 0.41 -0.1
23,149 + -0.4
23,149 + -0.1
23,149 + +0.2
23,149 + -1.2
23,149 + -0.3
23,149 + -0.8
23,149 + -0.3
23,149 + +1.2
23,149 + +0.1
23,149 + +0.7
23,149 + -1.0
23,149 + +1.8
23,149 + +0.4
23,149 + -0.8
23,149 + +1.0
23,150 - +1.0
23,150 - -1.1
23,150 - -0.8
23,150 - -1.7
23,150 - -2.2
23,150 - -0.1
23,150 - +0.7
23,150 - -0.2
23,150 - +1.2
23,150 - +0.4
23,150 - +1.5
23,150 - -1.0
23,150 - +1.8
23,150 - -0.2
23,150 - -1.0
23,150 - -0.6
23,150 - -1.8
23,150 - -0.0
23,474 + MPMX19_03783 0.45 -0.8
23,475 - MPMX19_03783 0.45 +0.3
23,475 - MPMX19_03783 0.45 +0.1
23,522 + MPMX19_03783 0.51 -0.2
23,522 + MPMX19_03783 0.51 -1.9
23,522 + MPMX19_03783 0.51 -0.3
23,522 + MPMX19_03783 0.51 -0.9
23,522 + MPMX19_03783 0.51 +0.6
23,522 + MPMX19_03783 0.51 -0.0
23,522 + MPMX19_03783 0.51 -0.9
23,523 - MPMX19_03783 0.51 -0.8
23,523 - MPMX19_03783 0.51 -0.8
23,523 - MPMX19_03783 0.51 -0.8
23,523 - MPMX19_03783 0.51 -0.8
23,523 - MPMX19_03783 0.51 +0.8
23,523 - MPMX19_03783 0.51 -1.2
23,523 - MPMX19_03783 0.51 -3.3
23,523 - MPMX19_03783 0.51 -0.3
23,523 - MPMX19_03783 0.51 -1.1
23,523 - MPMX19_03783 0.51 +0.2
23,523 - MPMX19_03783 0.51 -0.8
23,669 + MPMX19_03783 0.70 -2.4
23,669 + MPMX19_03783 0.70 -0.6
23,669 + MPMX19_03783 0.70 -1.4
23,669 + MPMX19_03783 0.70 -1.7
23,669 + MPMX19_03783 0.70 +0.1
23,669 + MPMX19_03783 0.70 -3.0
23,669 + MPMX19_03783 0.70 -2.9
23,669 + MPMX19_03783 0.70 +0.3
23,669 + MPMX19_03783 0.70 -0.4
23,670 - MPMX19_03783 0.70 +1.0
23,670 - MPMX19_03783 0.70 +0.5
23,670 - MPMX19_03783 0.70 +1.0
23,670 - MPMX19_03783 0.70 -0.3
23,670 - MPMX19_03783 0.70 +0.2
23,684 + MPMX19_03783 0.72 -0.5
23,684 + MPMX19_03783 0.72 +0.3
23,684 + MPMX19_03783 0.72 -1.7
23,684 + MPMX19_03783 0.72 +0.7
23,684 + MPMX19_03783 0.72 -0.4
23,684 + MPMX19_03783 0.72 +0.1
23,684 + MPMX19_03783 0.72 -0.2
23,684 + MPMX19_03783 0.72 -0.2
23,684 + MPMX19_03783 0.72 +0.1
23,685 - MPMX19_03783 0.72 -1.2
23,685 - MPMX19_03783 0.72 -1.2
23,685 - MPMX19_03783 0.72 +1.2
23,685 - MPMX19_03783 0.72 -0.3
23,685 - MPMX19_03783 0.72 +0.7
23,685 - MPMX19_03783 0.72 +1.2
23,685 - MPMX19_03783 0.72 -2.5
23,685 - MPMX19_03783 0.72 -1.1
23,685 - MPMX19_03783 0.72 -0.4
23,731 + MPMX19_03783 0.79 -0.2
23,744 + MPMX19_03783 0.80 +0.2
23,745 - MPMX19_03783 0.80 -2.8
23,745 - MPMX19_03783 0.80 -0.5
23,923 + MPMX19_03784 0.14 -0.4
23,923 + MPMX19_03784 0.14 -1.1
23,923 + MPMX19_03784 0.14 -1.5
23,923 + MPMX19_03784 0.14 -0.2
23,923 + MPMX19_03784 0.14 -0.9
23,924 - MPMX19_03784 0.14 -0.9
24,584 + MPMX19_03786 0.70 -1.7
24,584 + MPMX19_03786 0.70 +1.3
24,584 + MPMX19_03786 0.70 +0.8
24,584 + MPMX19_03786 0.70 +1.2
24,584 + MPMX19_03786 0.70 +0.1
24,585 - MPMX19_03786 0.70 -0.7
24,585 - MPMX19_03786 0.70 -1.0
24,585 - MPMX19_03786 0.70 +0.2
24,585 - MPMX19_03786 0.70 +1.0
24,585 - MPMX19_03786 0.70 -0.8
24,585 - MPMX19_03786 0.70 -0.0
24,585 - MPMX19_03786 0.70 +0.3
24,585 - MPMX19_03786 0.70 +0.2
24,922 + MPMX19_03787 0.54 -0.6
24,923 - MPMX19_03787 0.55 -2.5
24,923 - MPMX19_03787 0.55 -2.0

Or see this region's nucleotide sequence