Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03518 and MPMX19_03519 are separated by 176 nucleotides MPMX19_03519 and MPMX19_03520 are separated by 155 nucleotides MPMX19_03520 and MPMX19_03521 are separated by 173 nucleotides MPMX19_03521 and MPMX19_03522 are separated by 88 nucleotides
MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020
_03518
MPMX19_03519: MPMX19_03519 - Hydrogenase maturation factor HybF, at 938,197 to 938,439
_03519
MPMX19_03520: MPMX19_03520 - Hydrogen peroxide-inducible genes activator, at 938,595 to 939,494
_03520
MPMX19_03521: MPMX19_03521 - Glutathione S-transferase GST-4.5, at 939,668 to 940,279
_03521
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
Position (kb) 938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.949 kb on + strand at 938.013 kb on - strand at 938.013 kb on - strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.313 kb on - strand, within MPMX19_03519 at 938.443 kb on + strand at 938.443 kb on + strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.460 kb on - strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.084 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.501 kb on - strand at 939.501 kb on - strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.723 kb on + strand at 939.724 kb on - strand at 939.724 kb on - strand at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 940.057 kb on + strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 937,601 + MPMX19_03518 0.81 -0.6 937,601 + MPMX19_03518 0.81 -0.4 937,601 + MPMX19_03518 0.81 -0.4 937,601 + MPMX19_03518 0.81 +0.6 937,602 - MPMX19_03518 0.81 -1.2 937,602 - MPMX19_03518 0.81 -2.0 937,602 - MPMX19_03518 0.81 -0.6 937,602 - MPMX19_03518 0.81 +2.0 937,664 + MPMX19_03518 0.84 -0.5 937,664 + MPMX19_03518 0.84 +0.5 937,664 + MPMX19_03518 0.84 -1.4 937,665 - MPMX19_03518 0.84 -0.5 937,665 - MPMX19_03518 0.84 +0.3 937,665 - MPMX19_03518 0.84 +2.2 937,665 - MPMX19_03518 0.84 +0.6 937,665 - MPMX19_03518 0.84 -0.7 937,665 - MPMX19_03518 0.84 -0.3 937,665 - MPMX19_03518 0.84 -1.3 937,796 + MPMX19_03518 0.90 -0.6 937,796 + MPMX19_03518 0.90 -1.0 937,796 + MPMX19_03518 0.90 -0.6 937,796 + MPMX19_03518 0.90 -1.7 937,796 + MPMX19_03518 0.90 -1.2 937,796 + MPMX19_03518 0.90 -1.5 937,796 + MPMX19_03518 0.90 +0.6 937,796 + MPMX19_03518 0.90 -0.5 937,796 + MPMX19_03518 0.90 -2.1 937,797 - MPMX19_03518 0.90 +0.1 937,797 - MPMX19_03518 0.90 -0.1 937,797 - MPMX19_03518 0.90 +0.3 937,797 - MPMX19_03518 0.90 +0.3 937,797 - MPMX19_03518 0.90 +0.3 937,797 - MPMX19_03518 0.90 -0.2 937,797 - MPMX19_03518 0.90 -0.6 937,797 - MPMX19_03518 0.90 -1.0 937,797 - MPMX19_03518 0.90 -0.5 937,797 - MPMX19_03518 0.90 -1.5 937,797 - MPMX19_03518 0.90 -0.9 937,797 - MPMX19_03518 0.90 -0.1 937,797 - MPMX19_03518 0.90 -0.6 937,797 - MPMX19_03518 0.90 -0.2 937,798 + MPMX19_03518 0.90 +1.0 937,798 + MPMX19_03518 0.90 -0.2 937,798 + MPMX19_03518 0.90 +0.0 937,798 + MPMX19_03518 0.90 -0.2 937,798 + MPMX19_03518 0.90 -0.2 937,798 + MPMX19_03518 0.90 -0.1 937,799 - MPMX19_03518 0.90 -1.0 937,799 - MPMX19_03518 0.90 +0.0 937,799 - MPMX19_03518 0.90 -0.4 937,799 - MPMX19_03518 0.90 -0.4 937,799 - MPMX19_03518 0.90 -0.2 937,799 - MPMX19_03518 0.90 -0.4 937,799 - MPMX19_03518 0.90 -0.9 937,805 + -0.5 937,805 + +1.6 937,805 + -1.7 937,805 + +0.6 937,806 - -0.8 937,806 - -0.8 937,806 - -1.5 937,806 - -0.2 937,806 - -0.2 937,806 - -0.3 937,878 - -0.8 937,878 - -0.4 937,883 + -0.0 937,883 + -1.1 937,883 + -0.4 937,884 - -2.7 937,884 - -0.8 937,884 - -1.0 937,884 - +0.1 937,884 - -0.1 937,884 - +0.0 937,884 - +0.4 937,934 + +0.3 937,934 + -1.0 937,934 + +0.3 937,934 + -1.4 937,934 + -1.3 937,935 - -0.8 937,935 - -0.7 937,935 - +0.2 937,935 - -2.4 937,935 - -0.2 937,935 - -1.0 937,949 + -1.3 938,013 - -1.3 938,013 - +1.0 938,065 + -0.5 938,065 + -1.0 938,065 + -1.5 938,065 + -0.0 938,065 + -1.8 938,065 + -0.0 938,065 + +0.6 938,065 + +0.4 938,065 + -1.0 938,065 + +0.6 938,065 + -1.5 938,065 + +1.1 938,123 - -1.3 938,123 - -1.0 938,123 - -0.6 938,313 - MPMX19_03519 0.48 +0.4 938,443 + +0.4 938,443 + -2.1 938,444 - -1.2 938,444 - -1.4 938,444 - -0.7 938,459 + -1.0 938,459 + -2.4 938,459 + -1.1 938,460 - -0.1 938,508 + -0.5 938,508 + +0.2 938,508 + -1.4 938,508 + -0.6 938,508 + +0.0 938,508 + -1.4 938,508 + -1.9 938,508 + -1.1 938,508 + -2.2 938,508 + -0.2 938,508 + -2.1 938,508 + +0.3 938,508 + -0.2 938,508 + -0.7 938,508 + -0.6 938,509 - -0.2 938,509 - +0.2 938,509 - -0.7 938,509 - -1.7 938,509 - +0.8 938,509 - -0.5 938,509 - -0.5 938,509 - -1.2 938,509 - -0.4 938,509 - -0.4 938,509 - -1.4 938,509 - -1.1 938,509 - -2.0 938,509 - -2.1 938,509 - -0.2 938,547 + -0.3 938,547 + -1.0 938,547 + -1.5 938,548 - -0.2 938,548 - -0.2 938,548 - -0.7 938,548 - -0.2 938,548 - -0.1 938,548 - -2.0 938,548 - -0.2 938,548 - -0.7 938,814 + MPMX19_03520 0.24 -0.4 938,814 + MPMX19_03520 0.24 -1.0 938,814 + MPMX19_03520 0.24 -2.4 938,814 + MPMX19_03520 0.24 -1.5 938,815 - MPMX19_03520 0.24 -1.2 938,815 - MPMX19_03520 0.24 +0.0 939,027 + MPMX19_03520 0.48 -0.2 939,027 + MPMX19_03520 0.48 -1.0 939,027 + MPMX19_03520 0.48 +0.3 939,027 + MPMX19_03520 0.48 -1.2 939,027 + MPMX19_03520 0.48 -0.1 939,027 + MPMX19_03520 0.48 +0.3 939,028 - MPMX19_03520 0.48 -1.7 939,028 - MPMX19_03520 0.48 +0.9 939,028 - MPMX19_03520 0.48 +0.6 939,028 - MPMX19_03520 0.48 -1.8 939,028 - MPMX19_03520 0.48 -1.5 939,028 - MPMX19_03520 0.48 -0.9 939,028 - MPMX19_03520 0.48 -1.1 939,073 - MPMX19_03520 0.53 -1.4 939,073 - MPMX19_03520 0.53 -0.5 939,084 + MPMX19_03520 0.54 +0.6 939,293 + MPMX19_03520 0.78 +0.6 939,293 + MPMX19_03520 0.78 -0.8 939,500 + -0.5 939,500 + -0.6 939,500 + +0.0 939,500 + -1.2 939,500 + +0.1 939,500 + +0.6 939,501 - +1.0 939,501 - +0.0 939,510 + -1.0 939,510 + +1.4 939,510 + -1.5 939,511 - -0.4 939,511 - +0.2 939,511 - -0.1 939,512 + -2.0 939,512 + -0.0 939,512 + -0.5 939,512 + +0.6 939,512 + -0.7 939,512 + -0.7 939,512 + -0.4 939,512 + -0.8 939,512 + -0.6 939,512 + -0.4 939,512 + -1.5 939,512 + -1.2 939,512 + -2.5 939,512 + -1.1 939,512 + -0.6 939,512 + -1.0 939,512 + -0.0 939,512 + -1.4 939,512 + -1.2 939,512 + +0.1 939,512 + -0.4 939,512 + -0.4 939,513 - -0.5 939,513 - -0.5 939,513 - +0.5 939,513 - -0.1 939,513 - -1.2 939,513 - +1.9 939,513 - -0.8 939,513 - -0.7 939,513 - -0.2 939,513 - -1.4 939,513 - -0.6 939,513 - -0.7 939,513 - +0.4 939,513 - -1.7 939,513 - +0.1 939,513 - -0.4 939,513 - +1.5 939,513 - -0.2 939,513 - +0.0 939,513 - +0.6 939,513 - -0.6 939,513 - -1.5 939,513 - -1.3 939,513 - -0.6 939,513 - -0.8 939,513 - -1.1 939,513 - -0.2 939,513 - -0.1 939,677 + +1.2 939,677 + -0.1 939,677 + -0.1 939,677 + -1.5 939,677 + +0.2 939,677 + -0.2 939,677 + -0.4 939,678 - -1.1 939,678 - -0.9 939,678 - -0.1 939,678 - -0.6 939,678 - +1.2 939,678 - +0.4 939,678 - -0.5 939,678 - -1.6 939,678 - -0.2 939,678 - -1.0 939,723 + -0.8 939,724 - +0.1 939,724 - -1.1 939,878 + MPMX19_03521 0.34 -0.6 939,878 + MPMX19_03521 0.34 +0.3 939,878 + MPMX19_03521 0.34 -0.0 939,878 + MPMX19_03521 0.34 -0.6 939,879 - MPMX19_03521 0.34 +0.4 939,879 - MPMX19_03521 0.34 +0.0 939,980 + MPMX19_03521 0.51 -0.6 939,980 + MPMX19_03521 0.51 -2.2 940,057 + MPMX19_03521 0.64 -0.4 940,058 - MPMX19_03521 0.64 -2.0 940,058 - MPMX19_03521 0.64 -1.0 940,142 + MPMX19_03521 0.77 +0.1 940,142 + MPMX19_03521 0.77 +0.5 940,142 + MPMX19_03521 0.77 +0.5 940,142 + MPMX19_03521 0.77 +0.0 940,142 + MPMX19_03521 0.77 -1.5 940,143 - MPMX19_03521 0.78 -0.2 940,143 - MPMX19_03521 0.78 +0.2 940,143 - MPMX19_03521 0.78 +0.0 940,143 - MPMX19_03521 0.78 -0.5 940,143 - MPMX19_03521 0.78 -0.8 940,143 - MPMX19_03521 0.78 -2.1 940,143 - MPMX19_03521 0.78 -1.0 940,143 - MPMX19_03521 0.78 -0.6 940,148 + MPMX19_03521 0.78 -0.4 940,148 + MPMX19_03521 0.78 -1.3 940,148 + MPMX19_03521 0.78 +0.5 940,148 + MPMX19_03521 0.78 -0.4 940,148 + MPMX19_03521 0.78 -1.0 940,148 + MPMX19_03521 0.78 +0.2 940,149 - MPMX19_03521 0.79 -1.0 940,149 - MPMX19_03521 0.79 +0.3 940,149 - MPMX19_03521 0.79 +0.9 940,149 - MPMX19_03521 0.79 -0.7 940,149 - MPMX19_03521 0.79 -0.5 940,149 - MPMX19_03521 0.79 +0.3 940,149 - MPMX19_03521 0.79 +1.6 940,149 - MPMX19_03521 0.79 -1.0 940,149 - MPMX19_03521 0.79 -0.1 940,251 + -0.8
Or see this region's nucleotide sequence