Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03515

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03513 and MPMX19_03514 are separated by 19 nucleotidesMPMX19_03514 and MPMX19_03515 are separated by 12 nucleotidesMPMX19_03515 and MPMX19_03516 overlap by 4 nucleotides MPMX19_03513: MPMX19_03513 - Na(+)/H(+) antiporter subunit A, at 929,640 to 931,103 _03513 MPMX19_03514: MPMX19_03514 - Formate hydrogenlyase subunit 4, at 931,123 to 932,061 _03514 MPMX19_03515: MPMX19_03515 - Hydrogenase-4 component B, at 932,074 to 934,101 _03515 MPMX19_03516: MPMX19_03516 - Hydrogenase-4 component A, at 934,098 to 934,691 _03516 Position (kb) 932 933 934 935Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.098 kb on + strandat 931.099 kb on - strandat 931.099 kb on - strandat 931.099 kb on - strandat 931.099 kb on - strandat 931.103 kb on + strandat 931.103 kb on + strandat 931.103 kb on + strandat 931.103 kb on + strandat 931.103 kb on + strandat 931.104 kb on - strandat 931.104 kb on - strandat 931.104 kb on - strandat 931.104 kb on - strandat 931.104 kb on - strandat 931.104 kb on - strandat 931.139 kb on + strandat 931.139 kb on + strandat 931.140 kb on - strandat 931.140 kb on - strandat 931.140 kb on - strandat 931.140 kb on - strandat 931.415 kb on + strand, within MPMX19_03514at 931.466 kb on + strand, within MPMX19_03514at 931.466 kb on + strand, within MPMX19_03514at 931.466 kb on + strand, within MPMX19_03514at 931.467 kb on - strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.490 kb on + strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.491 kb on - strand, within MPMX19_03514at 931.499 kb on + strand, within MPMX19_03514at 931.500 kb on - strand, within MPMX19_03514at 931.500 kb on - strand, within MPMX19_03514at 931.500 kb on - strand, within MPMX19_03514at 931.702 kb on + strand, within MPMX19_03514at 931.702 kb on + strand, within MPMX19_03514at 931.703 kb on - strand, within MPMX19_03514at 931.703 kb on - strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.745 kb on + strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 931.746 kb on - strand, within MPMX19_03514at 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.117 kb on + strandat 932.118 kb on - strandat 932.118 kb on - strandat 932.126 kb on + strandat 932.126 kb on + strandat 932.126 kb on + strandat 932.126 kb on + strandat 932.127 kb on - strandat 932.127 kb on - strandat 932.127 kb on - strandat 932.127 kb on - strandat 932.309 kb on + strand, within MPMX19_03515at 932.309 kb on + strand, within MPMX19_03515at 932.309 kb on + strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.310 kb on - strand, within MPMX19_03515at 932.385 kb on - strand, within MPMX19_03515at 932.744 kb on + strand, within MPMX19_03515at 932.745 kb on - strand, within MPMX19_03515at 932.864 kb on + strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.865 kb on - strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.870 kb on + strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 932.871 kb on - strand, within MPMX19_03515at 933.068 kb on + strand, within MPMX19_03515at 933.069 kb on - strand, within MPMX19_03515at 933.069 kb on - strand, within MPMX19_03515at 933.069 kb on - strand, within MPMX19_03515at 933.069 kb on - strand, within MPMX19_03515at 933.069 kb on - strand, within MPMX19_03515at 933.163 kb on - strand, within MPMX19_03515at 933.218 kb on + strand, within MPMX19_03515at 933.602 kb on + strand, within MPMX19_03515at 933.602 kb on + strand, within MPMX19_03515at 933.602 kb on + strand, within MPMX19_03515at 933.602 kb on + strand, within MPMX19_03515at 933.603 kb on - strand, within MPMX19_03515at 933.656 kb on + strand, within MPMX19_03515at 933.656 kb on + strand, within MPMX19_03515at 933.656 kb on + strand, within MPMX19_03515at 933.785 kb on + strand, within MPMX19_03515at 933.785 kb on + strand, within MPMX19_03515at 933.797 kb on + strand, within MPMX19_03515at 933.797 kb on + strand, within MPMX19_03515at 933.797 kb on + strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.798 kb on - strand, within MPMX19_03515at 933.809 kb on + strand, within MPMX19_03515at 933.809 kb on + strand, within MPMX19_03515at 933.809 kb on + strand, within MPMX19_03515at 933.810 kb on - strand, within MPMX19_03515at 933.810 kb on - strand, within MPMX19_03515at 934.691 kb on + strandat 934.919 kb on - strandat 935.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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931,098 + +0.3
931,098 + -0.2
931,098 + -0.6
931,098 + -0.7
931,098 + +0.4
931,098 + +0.0
931,098 + +1.0
931,098 + -0.4
931,098 + -2.4
931,098 + -0.1
931,099 - +0.2
931,099 - -1.4
931,099 - +0.2
931,099 - -2.7
931,103 + +0.3
931,103 + +1.6
931,103 + -0.5
931,103 + -1.3
931,103 + -0.2
931,104 - -1.8
931,104 - -0.2
931,104 - -0.4
931,104 - -0.7
931,104 - -1.8
931,104 - -0.7
931,139 + +1.0
931,139 + +0.2
931,140 - -1.0
931,140 - -0.6
931,140 - +1.2
931,140 - -0.9
931,415 + MPMX19_03514 0.31 -0.1
931,466 + MPMX19_03514 0.37 -2.1
931,466 + MPMX19_03514 0.37 +0.5
931,466 + MPMX19_03514 0.37 -0.7
931,467 - MPMX19_03514 0.37 -0.8
931,490 + MPMX19_03514 0.39 -1.0
931,490 + MPMX19_03514 0.39 -0.7
931,490 + MPMX19_03514 0.39 -0.1
931,490 + MPMX19_03514 0.39 +0.5
931,490 + MPMX19_03514 0.39 -0.6
931,490 + MPMX19_03514 0.39 +0.0
931,490 + MPMX19_03514 0.39 -0.5
931,490 + MPMX19_03514 0.39 -0.7
931,490 + MPMX19_03514 0.39 -0.5
931,490 + MPMX19_03514 0.39 -1.5
931,490 + MPMX19_03514 0.39 +1.2
931,490 + MPMX19_03514 0.39 -0.2
931,490 + MPMX19_03514 0.39 -1.0
931,490 + MPMX19_03514 0.39 -1.5
931,490 + MPMX19_03514 0.39 -0.1
931,490 + MPMX19_03514 0.39 -0.5
931,490 + MPMX19_03514 0.39 -1.0
931,491 - MPMX19_03514 0.39 +0.6
931,491 - MPMX19_03514 0.39 -0.5
931,491 - MPMX19_03514 0.39 -0.4
931,491 - MPMX19_03514 0.39 +0.6
931,491 - MPMX19_03514 0.39 -0.1
931,491 - MPMX19_03514 0.39 -1.0
931,491 - MPMX19_03514 0.39 -0.2
931,491 - MPMX19_03514 0.39 +0.0
931,491 - MPMX19_03514 0.39 -1.8
931,491 - MPMX19_03514 0.39 +0.6
931,491 - MPMX19_03514 0.39 -0.2
931,491 - MPMX19_03514 0.39 -0.2
931,499 + MPMX19_03514 0.40 -2.0
931,500 - MPMX19_03514 0.40 +0.4
931,500 - MPMX19_03514 0.40 +0.2
931,500 - MPMX19_03514 0.40 -1.8
931,702 + MPMX19_03514 0.62 -0.5
931,702 + MPMX19_03514 0.62 +0.0
931,703 - MPMX19_03514 0.62 +0.3
931,703 - MPMX19_03514 0.62 -0.2
931,745 + MPMX19_03514 0.66 -0.6
931,745 + MPMX19_03514 0.66 -2.8
931,745 + MPMX19_03514 0.66 -1.7
931,745 + MPMX19_03514 0.66 -0.5
931,745 + MPMX19_03514 0.66 -0.5
931,745 + MPMX19_03514 0.66 -1.4
931,745 + MPMX19_03514 0.66 +0.0
931,745 + MPMX19_03514 0.66 +0.4
931,745 + MPMX19_03514 0.66 -0.6
931,745 + MPMX19_03514 0.66 -0.6
931,745 + MPMX19_03514 0.66 -1.5
931,745 + MPMX19_03514 0.66 -0.7
931,745 + MPMX19_03514 0.66 -0.0
931,746 - MPMX19_03514 0.66 +0.5
931,746 - MPMX19_03514 0.66 +0.0
931,746 - MPMX19_03514 0.66 -0.0
931,746 - MPMX19_03514 0.66 +0.6
931,746 - MPMX19_03514 0.66 +0.4
931,746 - MPMX19_03514 0.66 -1.2
931,746 - MPMX19_03514 0.66 -1.0
932,117 + -1.1
932,117 + +0.1
932,117 + -0.0
932,117 + -1.7
932,117 + -0.0
932,117 + -1.5
932,117 + +0.6
932,117 + -0.5
932,117 + -1.3
932,118 - -0.4
932,118 - +0.4
932,126 + -1.2
932,126 + -0.4
932,126 + +0.5
932,126 + -1.5
932,127 - -0.7
932,127 - +1.3
932,127 - -0.5
932,127 - -0.4
932,309 + MPMX19_03515 0.12 -0.3
932,309 + MPMX19_03515 0.12 -0.6
932,309 + MPMX19_03515 0.12 +0.4
932,310 - MPMX19_03515 0.12 -0.5
932,310 - MPMX19_03515 0.12 -1.6
932,310 - MPMX19_03515 0.12 +0.6
932,310 - MPMX19_03515 0.12 -0.5
932,310 - MPMX19_03515 0.12 +0.2
932,310 - MPMX19_03515 0.12 -0.4
932,385 - MPMX19_03515 0.15 -0.5
932,744 + MPMX19_03515 0.33 -0.4
932,745 - MPMX19_03515 0.33 -0.4
932,864 + MPMX19_03515 0.39 +0.2
932,865 - MPMX19_03515 0.39 -0.5
932,865 - MPMX19_03515 0.39 +0.5
932,865 - MPMX19_03515 0.39 -0.4
932,865 - MPMX19_03515 0.39 +0.6
932,865 - MPMX19_03515 0.39 +0.6
932,865 - MPMX19_03515 0.39 +0.0
932,870 + MPMX19_03515 0.39 +0.8
932,870 + MPMX19_03515 0.39 -0.4
932,870 + MPMX19_03515 0.39 -1.0
932,870 + MPMX19_03515 0.39 -0.6
932,870 + MPMX19_03515 0.39 +3.2
932,870 + MPMX19_03515 0.39 -0.4
932,870 + MPMX19_03515 0.39 -0.0
932,870 + MPMX19_03515 0.39 -1.1
932,871 - MPMX19_03515 0.39 -0.7
932,871 - MPMX19_03515 0.39 -0.5
932,871 - MPMX19_03515 0.39 +0.5
932,871 - MPMX19_03515 0.39 -0.4
932,871 - MPMX19_03515 0.39 +0.1
932,871 - MPMX19_03515 0.39 -0.3
933,068 + MPMX19_03515 0.49 +0.1
933,069 - MPMX19_03515 0.49 -0.1
933,069 - MPMX19_03515 0.49 -1.1
933,069 - MPMX19_03515 0.49 -0.4
933,069 - MPMX19_03515 0.49 -0.7
933,069 - MPMX19_03515 0.49 -1.8
933,163 - MPMX19_03515 0.54 -0.2
933,218 + MPMX19_03515 0.56 -0.6
933,602 + MPMX19_03515 0.75 +0.3
933,602 + MPMX19_03515 0.75 -0.8
933,602 + MPMX19_03515 0.75 -0.5
933,602 + MPMX19_03515 0.75 -1.2
933,603 - MPMX19_03515 0.75 -2.0
933,656 + MPMX19_03515 0.78 -0.2
933,656 + MPMX19_03515 0.78 +0.2
933,656 + MPMX19_03515 0.78 -0.9
933,785 + MPMX19_03515 0.84 -1.2
933,785 + MPMX19_03515 0.84 -2.1
933,797 + MPMX19_03515 0.85 +0.3
933,797 + MPMX19_03515 0.85 -0.2
933,797 + MPMX19_03515 0.85 -1.5
933,798 - MPMX19_03515 0.85 -0.6
933,798 - MPMX19_03515 0.85 -1.0
933,798 - MPMX19_03515 0.85 -0.2
933,798 - MPMX19_03515 0.85 -0.9
933,798 - MPMX19_03515 0.85 -0.1
933,798 - MPMX19_03515 0.85 -0.7
933,798 - MPMX19_03515 0.85 -0.4
933,809 + MPMX19_03515 0.86 +0.5
933,809 + MPMX19_03515 0.86 +0.3
933,809 + MPMX19_03515 0.86 -1.5
933,810 - MPMX19_03515 0.86 +1.0
933,810 - MPMX19_03515 0.86 +0.4
934,691 + -0.7
934,919 - -1.5
935,051 + +1.3

Or see this region's nucleotide sequence