Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03498 and MPMX19_03499 overlap by 4 nucleotides MPMX19_03499 and MPMX19_03500 are separated by 16 nucleotides MPMX19_03500 and MPMX19_03501 are separated by 120 nucleotides MPMX19_03501 and MPMX19_03502 are separated by 44 nucleotides
MPMX19_03498: MPMX19_03498 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 917,207 to 918,118
_03498
MPMX19_03499: MPMX19_03499 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 918,115 to 918,774
_03499
MPMX19_03500: MPMX19_03500 - Sulfur carrier protein FdhD, at 918,791 to 919,627
_03500
MPMX19_03501: MPMX19_03501 - hypothetical protein, at 919,748 to 920,326
_03501
MPMX19_03502: MPMX19_03502 - Hydrogenase maturation factor HybG, at 920,371 to 920,652
_03502
Position (kb)
918
919
920 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 917.837 kb on + strand, within MPMX19_03498 at 917.837 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.873 kb on + strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.874 kb on - strand, within MPMX19_03498 at 917.906 kb on + strand, within MPMX19_03498 at 917.906 kb on + strand, within MPMX19_03498 at 918.023 kb on + strand, within MPMX19_03498 at 918.023 kb on + strand, within MPMX19_03498 at 918.023 kb on + strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.024 kb on - strand, within MPMX19_03498 at 918.178 kb on + strand at 918.179 kb on - strand at 918.259 kb on + strand, within MPMX19_03499 at 918.260 kb on - strand, within MPMX19_03499 at 918.260 kb on - strand, within MPMX19_03499 at 918.469 kb on + strand, within MPMX19_03499 at 918.469 kb on + strand, within MPMX19_03499 at 918.470 kb on - strand, within MPMX19_03499 at 918.655 kb on + strand, within MPMX19_03499 at 918.708 kb on + strand, within MPMX19_03499 at 918.932 kb on + strand, within MPMX19_03500 at 918.932 kb on + strand, within MPMX19_03500 at 918.932 kb on + strand, within MPMX19_03500 at 918.932 kb on + strand, within MPMX19_03500 at 918.932 kb on + strand, within MPMX19_03500 at 918.932 kb on + strand, within MPMX19_03500 at 918.933 kb on - strand, within MPMX19_03500 at 918.933 kb on - strand, within MPMX19_03500 at 918.933 kb on - strand, within MPMX19_03500 at 918.933 kb on - strand, within MPMX19_03500 at 918.933 kb on - strand, within MPMX19_03500 at 919.084 kb on + strand, within MPMX19_03500 at 919.084 kb on + strand, within MPMX19_03500 at 919.085 kb on - strand, within MPMX19_03500 at 919.085 kb on - strand, within MPMX19_03500 at 919.085 kb on - strand, within MPMX19_03500 at 919.598 kb on + strand at 919.598 kb on + strand at 919.598 kb on + strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.664 kb on + strand at 919.664 kb on + strand at 919.890 kb on + strand, within MPMX19_03501
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 917,837 + MPMX19_03498 0.69 -0.8 917,837 + MPMX19_03498 0.69 -0.2 917,873 + MPMX19_03498 0.73 -1.2 917,873 + MPMX19_03498 0.73 +0.2 917,873 + MPMX19_03498 0.73 -0.9 917,873 + MPMX19_03498 0.73 -1.2 917,873 + MPMX19_03498 0.73 -0.4 917,873 + MPMX19_03498 0.73 +1.0 917,873 + MPMX19_03498 0.73 +0.4 917,873 + MPMX19_03498 0.73 +1.0 917,873 + MPMX19_03498 0.73 -0.8 917,873 + MPMX19_03498 0.73 +0.4 917,873 + MPMX19_03498 0.73 -2.1 917,873 + MPMX19_03498 0.73 +0.8 917,873 + MPMX19_03498 0.73 -0.2 917,873 + MPMX19_03498 0.73 +1.2 917,873 + MPMX19_03498 0.73 -0.8 917,873 + MPMX19_03498 0.73 -0.5 917,873 + MPMX19_03498 0.73 -0.4 917,873 + MPMX19_03498 0.73 +0.0 917,873 + MPMX19_03498 0.73 -2.4 917,873 + MPMX19_03498 0.73 -1.0 917,873 + MPMX19_03498 0.73 -0.3 917,873 + MPMX19_03498 0.73 -1.5 917,873 + MPMX19_03498 0.73 +0.1 917,873 + MPMX19_03498 0.73 +0.3 917,873 + MPMX19_03498 0.73 -0.7 917,873 + MPMX19_03498 0.73 -1.8 917,873 + MPMX19_03498 0.73 -0.7 917,873 + MPMX19_03498 0.73 -0.0 917,874 - MPMX19_03498 0.73 -0.1 917,874 - MPMX19_03498 0.73 -0.7 917,874 - MPMX19_03498 0.73 +0.2 917,874 - MPMX19_03498 0.73 -3.0 917,874 - MPMX19_03498 0.73 -0.8 917,874 - MPMX19_03498 0.73 -0.5 917,874 - MPMX19_03498 0.73 +1.5 917,874 - MPMX19_03498 0.73 +0.1 917,874 - MPMX19_03498 0.73 +0.6 917,874 - MPMX19_03498 0.73 -1.0 917,874 - MPMX19_03498 0.73 -2.4 917,874 - MPMX19_03498 0.73 -0.7 917,874 - MPMX19_03498 0.73 -1.4 917,874 - MPMX19_03498 0.73 -2.3 917,874 - MPMX19_03498 0.73 -0.6 917,874 - MPMX19_03498 0.73 -1.4 917,874 - MPMX19_03498 0.73 -0.7 917,874 - MPMX19_03498 0.73 +0.8 917,874 - MPMX19_03498 0.73 -0.8 917,874 - MPMX19_03498 0.73 -0.3 917,874 - MPMX19_03498 0.73 +0.0 917,906 + MPMX19_03498 0.77 -1.0 917,906 + MPMX19_03498 0.77 -1.3 918,023 + MPMX19_03498 0.89 -0.1 918,023 + MPMX19_03498 0.89 -1.2 918,023 + MPMX19_03498 0.89 -0.1 918,024 - MPMX19_03498 0.90 -1.4 918,024 - MPMX19_03498 0.90 -0.2 918,024 - MPMX19_03498 0.90 -0.2 918,024 - MPMX19_03498 0.90 +1.1 918,024 - MPMX19_03498 0.90 -0.6 918,024 - MPMX19_03498 0.90 -0.2 918,024 - MPMX19_03498 0.90 -0.4 918,024 - MPMX19_03498 0.90 -2.0 918,178 + +1.2 918,179 - +0.5 918,259 + MPMX19_03499 0.22 +0.3 918,260 - MPMX19_03499 0.22 -1.8 918,260 - MPMX19_03499 0.22 -0.2 918,469 + MPMX19_03499 0.54 -2.0 918,469 + MPMX19_03499 0.54 -0.5 918,470 - MPMX19_03499 0.54 -1.2 918,655 + MPMX19_03499 0.82 -0.8 918,708 + MPMX19_03499 0.90 +0.4 918,932 + MPMX19_03500 0.17 +1.0 918,932 + MPMX19_03500 0.17 -0.8 918,932 + MPMX19_03500 0.17 -1.4 918,932 + MPMX19_03500 0.17 -1.4 918,932 + MPMX19_03500 0.17 -0.4 918,932 + MPMX19_03500 0.17 -1.5 918,933 - MPMX19_03500 0.17 -0.8 918,933 - MPMX19_03500 0.17 -1.0 918,933 - MPMX19_03500 0.17 -1.0 918,933 - MPMX19_03500 0.17 -1.7 918,933 - MPMX19_03500 0.17 -2.3 919,084 + MPMX19_03500 0.35 -1.0 919,084 + MPMX19_03500 0.35 -1.0 919,085 - MPMX19_03500 0.35 -1.8 919,085 - MPMX19_03500 0.35 -1.2 919,085 - MPMX19_03500 0.35 -0.3 919,598 + -0.4 919,598 + +0.0 919,598 + -0.5 919,599 - -0.2 919,599 - -1.5 919,599 - -1.2 919,664 + -0.1 919,664 + -0.9 919,890 + MPMX19_03501 0.25 -0.0
Or see this region's nucleotide sequence