Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03494

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03493 and MPMX19_03494 are separated by 333 nucleotidesMPMX19_03494 and MPMX19_03495 overlap by 13 nucleotides MPMX19_03493: MPMX19_03493 - hypothetical protein, at 907,418 to 909,121 _03493 MPMX19_03494: MPMX19_03494 - Regulatory protein AtoC, at 909,455 to 910,861 _03494 MPMX19_03495: MPMX19_03495 - Adaptive-response sensory-kinase SasA, at 910,849 to 912,963 _03495 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 908.532 kb on + strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.695 kb on - strand, within MPMX19_03493at 908.695 kb on - strand, within MPMX19_03493at 908.736 kb on + strand, within MPMX19_03493at 908.737 kb on - strand, within MPMX19_03493at 908.793 kb on + strand, within MPMX19_03493at 908.794 kb on - strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 909.126 kb on + strandat 909.126 kb on + strandat 909.126 kb on + strandat 909.127 kb on - strandat 909.127 kb on - strandat 909.127 kb on - strandat 909.131 kb on - strandat 909.225 kb on + strandat 909.227 kb on + strandat 909.227 kb on + strandat 909.362 kb on - strandat 909.362 kb on - strandat 909.380 kb on - strandat 909.380 kb on - strandat 909.423 kb on + strandat 909.424 kb on - strandat 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.223 kb on + strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.753 kb on + strandat 910.753 kb on + strandat 910.753 kb on + strandat 910.753 kb on + strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.987 kb on + strandat 910.988 kb on - strandat 910.988 kb on - strandat 911.005 kb on + strandat 911.005 kb on + strandat 911.005 kb on + strandat 911.006 kb on - strandat 911.006 kb on - strandat 911.006 kb on - strandat 911.578 kb on + strand, within MPMX19_03495at 911.578 kb on + strand, within MPMX19_03495at 911.578 kb on + strand, within MPMX19_03495at 911.579 kb on - strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.711 kb on - strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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908,532 + MPMX19_03493 0.65 -0.5
908,533 - MPMX19_03493 0.65 +0.0
908,533 - MPMX19_03493 0.65 -0.8
908,533 - MPMX19_03493 0.65 -0.2
908,533 - MPMX19_03493 0.65 +0.8
908,533 - MPMX19_03493 0.65 -1.1
908,533 - MPMX19_03493 0.65 -0.7
908,694 + MPMX19_03493 0.75 -1.7
908,694 + MPMX19_03493 0.75 +1.3
908,694 + MPMX19_03493 0.75 +1.0
908,694 + MPMX19_03493 0.75 -0.2
908,695 - MPMX19_03493 0.75 -0.4
908,695 - MPMX19_03493 0.75 -1.0
908,736 + MPMX19_03493 0.77 -0.2
908,737 - MPMX19_03493 0.77 -0.4
908,793 + MPMX19_03493 0.81 -1.7
908,794 - MPMX19_03493 0.81 +1.6
908,847 + MPMX19_03493 0.84 -1.2
908,847 + MPMX19_03493 0.84 +0.1
908,847 + MPMX19_03493 0.84 +0.6
908,847 + MPMX19_03493 0.84 -0.5
908,847 + MPMX19_03493 0.84 +0.5
908,848 - MPMX19_03493 0.84 -2.2
908,848 - MPMX19_03493 0.84 -0.7
908,848 - MPMX19_03493 0.84 -0.6
908,848 - MPMX19_03493 0.84 -1.8
908,848 - MPMX19_03493 0.84 +0.3
909,126 + +0.0
909,126 + -0.4
909,126 + -1.7
909,127 - -1.0
909,127 - -0.6
909,127 - +1.5
909,131 - -1.1
909,225 + -0.0
909,227 + +0.0
909,227 + +0.0
909,362 - -0.1
909,362 - +1.2
909,380 - -0.2
909,380 - +0.7
909,423 + -0.6
909,424 - +0.4
910,220 + MPMX19_03494 0.54 +1.3
910,220 + MPMX19_03494 0.54 +1.1
910,220 + MPMX19_03494 0.54 -1.7
910,220 + MPMX19_03494 0.54 -0.8
910,220 + MPMX19_03494 0.54 -1.8
910,221 - MPMX19_03494 0.54 +0.2
910,221 - MPMX19_03494 0.54 -0.1
910,221 - MPMX19_03494 0.54 -2.6
910,221 - MPMX19_03494 0.54 +0.6
910,221 - MPMX19_03494 0.54 +0.9
910,223 + MPMX19_03494 0.55 -0.1
910,224 - MPMX19_03494 0.55 -0.9
910,224 - MPMX19_03494 0.55 +1.6
910,224 - MPMX19_03494 0.55 +0.1
910,224 - MPMX19_03494 0.55 -0.2
910,224 - MPMX19_03494 0.55 +0.3
910,753 + +0.2
910,753 + -0.7
910,753 + -0.7
910,753 + +0.9
910,754 - +0.2
910,754 - -1.5
910,754 - -0.5
910,754 - +0.6
910,754 - +2.0
910,987 + +0.6
910,988 - -0.7
910,988 - -1.0
911,005 + +0.5
911,005 + +0.3
911,005 + -0.2
911,006 - -2.4
911,006 - +0.0
911,006 - +1.5
911,578 + MPMX19_03495 0.34 -0.4
911,578 + MPMX19_03495 0.34 -0.2
911,578 + MPMX19_03495 0.34 -0.9
911,579 - MPMX19_03495 0.35 +1.1
911,710 + MPMX19_03495 0.41 +0.3
911,710 + MPMX19_03495 0.41 -0.2
911,710 + MPMX19_03495 0.41 +0.3
911,711 - MPMX19_03495 0.41 -0.5
911,773 + MPMX19_03495 0.44 -1.4
911,773 + MPMX19_03495 0.44 -2.0
911,773 + MPMX19_03495 0.44 -1.3
911,773 + MPMX19_03495 0.44 -1.8
911,773 + MPMX19_03495 0.44 -0.2
911,773 + MPMX19_03495 0.44 -1.1
911,773 + MPMX19_03495 0.44 +1.1
911,773 + MPMX19_03495 0.44 -1.5
911,773 + MPMX19_03495 0.44 +0.0
911,773 + MPMX19_03495 0.44 +0.9
911,773 + MPMX19_03495 0.44 -0.4
911,773 + MPMX19_03495 0.44 -0.9
911,773 + MPMX19_03495 0.44 -0.7
911,773 + MPMX19_03495 0.44 -1.1
911,773 + MPMX19_03495 0.44 -0.2
911,773 + MPMX19_03495 0.44 -1.4
911,773 + MPMX19_03495 0.44 -0.5
911,773 + MPMX19_03495 0.44 -1.5
911,773 + MPMX19_03495 0.44 -1.1
911,773 + MPMX19_03495 0.44 +0.6
911,773 + MPMX19_03495 0.44 -1.0
911,773 + MPMX19_03495 0.44 -1.8
911,773 + MPMX19_03495 0.44 -0.4
911,773 + MPMX19_03495 0.44 -1.5
911,773 + MPMX19_03495 0.44 -1.0
911,773 + MPMX19_03495 0.44 -0.7
911,773 + MPMX19_03495 0.44 -1.0
911,773 + MPMX19_03495 0.44 -0.2
911,774 - MPMX19_03495 0.44 +0.0
911,774 - MPMX19_03495 0.44 -0.1
911,774 - MPMX19_03495 0.44 -0.4
911,774 - MPMX19_03495 0.44 -0.4
911,774 - MPMX19_03495 0.44 -1.8
911,774 - MPMX19_03495 0.44 +0.5
911,774 - MPMX19_03495 0.44 -1.8
911,774 - MPMX19_03495 0.44 -0.5
911,774 - MPMX19_03495 0.44 +0.5
911,774 - MPMX19_03495 0.44 +0.3
911,774 - MPMX19_03495 0.44 +0.0
911,774 - MPMX19_03495 0.44 +0.5
911,774 - MPMX19_03495 0.44 +0.2
911,774 - MPMX19_03495 0.44 -0.2
911,774 - MPMX19_03495 0.44 -2.0
911,774 - MPMX19_03495 0.44 +2.1
911,774 - MPMX19_03495 0.44 -0.9
911,774 - MPMX19_03495 0.44 -0.8
911,774 - MPMX19_03495 0.44 -0.1
911,774 - MPMX19_03495 0.44 -1.0
911,774 - MPMX19_03495 0.44 +0.4
911,774 - MPMX19_03495 0.44 +0.0
911,830 + MPMX19_03495 0.46 -1.0
911,830 + MPMX19_03495 0.46 +0.3
911,830 + MPMX19_03495 0.46 +0.9
911,830 + MPMX19_03495 0.46 -0.6
911,830 + MPMX19_03495 0.46 +0.6
911,830 + MPMX19_03495 0.46 +1.2
911,830 + MPMX19_03495 0.46 -0.2
911,830 + MPMX19_03495 0.46 -1.5
911,830 + MPMX19_03495 0.46 -2.1
911,830 + MPMX19_03495 0.46 -0.6
911,831 - MPMX19_03495 0.46 -0.5
911,831 - MPMX19_03495 0.46 +0.1
911,831 - MPMX19_03495 0.46 +0.0
911,831 - MPMX19_03495 0.46 +0.8
911,831 - MPMX19_03495 0.46 -0.4
911,831 - MPMX19_03495 0.46 -0.1
911,831 - MPMX19_03495 0.46 -0.0
911,831 - MPMX19_03495 0.46 -1.3

Or see this region's nucleotide sequence