Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03472

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03471 and MPMX19_03472 overlap by 4 nucleotidesMPMX19_03472 and MPMX19_03473 are separated by 217 nucleotidesMPMX19_03473 and MPMX19_03474 are separated by 19 nucleotides MPMX19_03471: MPMX19_03471 - Bifunctional protein Aas, at 880,857 to 884,270 _03471 MPMX19_03472: MPMX19_03472 - Fatty acid metabolism regulator protein, at 884,267 to 884,875 _03472 MPMX19_03473: MPMX19_03473 - hypothetical protein, at 885,093 to 885,506 _03473 MPMX19_03474: MPMX19_03474 - hypothetical protein, at 885,526 to 886,110 _03474 Position (kb) 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.438 kb on + strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.439 kb on - strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 883.885 kb on + strand, within MPMX19_03471at 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.155 kb on + strandat 884.156 kb on - strandat 884.156 kb on - strandat 884.394 kb on + strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.395 kb on - strand, within MPMX19_03472at 884.470 kb on + strand, within MPMX19_03472at 884.471 kb on - strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.697 kb on + strand, within MPMX19_03472at 884.698 kb on - strand, within MPMX19_03472at 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.944 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.948 kb on - strandat 884.949 kb on + strandat 884.981 kb on + strandat 884.981 kb on + strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.982 kb on - strandat 884.984 kb on - strandat 884.984 kb on - strandat 884.991 kb on - strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.092 kb on + strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.093 kb on - strandat 885.132 kb on + strandat 885.132 kb on + strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.133 kb on - strandat 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.186 kb on + strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.187 kb on - strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.372 kb on + strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.373 kb on - strand, within MPMX19_03473at 885.438 kb on + strand, within MPMX19_03473at 885.439 kb on - strand, within MPMX19_03473at 885.486 kb on + strandat 885.486 kb on + strandat 885.486 kb on + strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.487 kb on - strandat 885.501 kb on + strandat 885.501 kb on + strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.502 kb on - strandat 885.623 kb on - strand, within MPMX19_03474at 885.623 kb on - strand, within MPMX19_03474

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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883,438 + MPMX19_03471 0.76 -0.8
883,438 + MPMX19_03471 0.76 -0.5
883,438 + MPMX19_03471 0.76 +0.2
883,438 + MPMX19_03471 0.76 -0.8
883,438 + MPMX19_03471 0.76 -0.6
883,438 + MPMX19_03471 0.76 -1.3
883,439 - MPMX19_03471 0.76 -1.0
883,439 - MPMX19_03471 0.76 -0.3
883,439 - MPMX19_03471 0.76 -1.4
883,439 - MPMX19_03471 0.76 -0.9
883,885 + MPMX19_03471 0.89 -2.0
883,885 + MPMX19_03471 0.89 -0.6
883,885 + MPMX19_03471 0.89 +0.6
883,885 + MPMX19_03471 0.89 -0.4
883,885 + MPMX19_03471 0.89 -0.5
883,885 + MPMX19_03471 0.89 +0.5
884,155 + +0.2
884,155 + -0.3
884,155 + +0.2
884,155 + +0.5
884,155 + -0.3
884,155 + -0.2
884,155 + -0.5
884,155 + +0.0
884,155 + -1.3
884,156 - +0.7
884,156 - -2.3
884,394 + MPMX19_03472 0.21 +0.6
884,395 - MPMX19_03472 0.21 -2.0
884,395 - MPMX19_03472 0.21 +1.6
884,470 + MPMX19_03472 0.33 +0.2
884,471 - MPMX19_03472 0.33 -1.2
884,697 + MPMX19_03472 0.71 -0.4
884,697 + MPMX19_03472 0.71 -0.9
884,697 + MPMX19_03472 0.71 -0.1
884,698 - MPMX19_03472 0.71 +0.0
884,944 - -0.2
884,944 - -0.8
884,944 - -1.0
884,944 - +1.0
884,948 - -1.0
884,948 - -0.3
884,948 - -0.4
884,949 + +0.2
884,981 + +0.4
884,981 + +0.3
884,982 - -1.3
884,982 - -1.4
884,982 - +0.9
884,984 - +0.8
884,984 - -1.8
884,991 - +0.1
885,092 + -0.5
885,092 + -0.4
885,092 + -1.0
885,092 + -0.4
885,092 + -1.2
885,092 + -0.4
885,092 + +0.0
885,093 - -1.0
885,093 - -0.8
885,093 - -1.4
885,093 - -1.0
885,132 + -1.7
885,132 + +0.3
885,133 - -0.7
885,133 - -0.9
885,133 - +1.3
885,186 + MPMX19_03473 0.22 -1.0
885,186 + MPMX19_03473 0.22 -1.2
885,186 + MPMX19_03473 0.22 -0.5
885,187 - MPMX19_03473 0.23 -1.2
885,187 - MPMX19_03473 0.23 +0.4
885,187 - MPMX19_03473 0.23 -2.2
885,187 - MPMX19_03473 0.23 +0.6
885,187 - MPMX19_03473 0.23 -0.3
885,372 + MPMX19_03473 0.67 +0.4
885,372 + MPMX19_03473 0.67 -0.1
885,372 + MPMX19_03473 0.67 -0.1
885,372 + MPMX19_03473 0.67 +0.6
885,372 + MPMX19_03473 0.67 -0.1
885,372 + MPMX19_03473 0.67 -1.2
885,372 + MPMX19_03473 0.67 +0.4
885,373 - MPMX19_03473 0.68 -0.5
885,373 - MPMX19_03473 0.68 +0.8
885,373 - MPMX19_03473 0.68 -0.7
885,373 - MPMX19_03473 0.68 -0.4
885,373 - MPMX19_03473 0.68 +0.3
885,373 - MPMX19_03473 0.68 -0.1
885,373 - MPMX19_03473 0.68 -0.6
885,438 + MPMX19_03473 0.83 -1.7
885,439 - MPMX19_03473 0.84 +0.6
885,486 + +0.7
885,486 + +0.2
885,486 + +0.4
885,487 - -0.7
885,487 - +0.8
885,487 - -0.5
885,487 - -1.8
885,501 + -0.7
885,501 + -2.9
885,502 - -0.5
885,502 - -0.7
885,502 - -0.4
885,502 - -1.5
885,502 - -2.2
885,502 - -1.0
885,502 - -1.8
885,502 - -0.0
885,502 - -0.6
885,623 - MPMX19_03474 0.17 +0.9
885,623 - MPMX19_03474 0.17 +0.0

Or see this region's nucleotide sequence