Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03470

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03468 and MPMX19_03469 overlap by 4 nucleotidesMPMX19_03469 and MPMX19_03470 overlap by 4 nucleotidesMPMX19_03470 and MPMX19_03471 overlap by 4 nucleotides MPMX19_03468: MPMX19_03468 - hypothetical protein, at 878,535 to 879,512 _03468 MPMX19_03469: MPMX19_03469 - hypothetical protein, at 879,509 to 880,183 _03469 MPMX19_03470: MPMX19_03470 - Phosphatidylinositol phosphate synthase, at 880,180 to 880,860 _03470 MPMX19_03471: MPMX19_03471 - Bifunctional protein Aas, at 880,857 to 884,270 _03471 Position (kb) 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.774 kb on + strand, within MPMX19_03469at 879.775 kb on - strand, within MPMX19_03469at 879.969 kb on + strand, within MPMX19_03469at 879.969 kb on + strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 879.970 kb on - strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.068 kb on + strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.069 kb on - strand, within MPMX19_03469at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.310 kb on + strand, within MPMX19_03470at 880.311 kb on - strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.445 kb on + strand, within MPMX19_03470at 880.446 kb on - strand, within MPMX19_03470at 880.505 kb on + strand, within MPMX19_03470at 880.559 kb on + strand, within MPMX19_03470at 880.559 kb on + strand, within MPMX19_03470at 880.560 kb on - strand, within MPMX19_03470at 881.496 kb on - strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.497 kb on + strand, within MPMX19_03471at 881.498 kb on - strand, within MPMX19_03471at 881.560 kb on + strand, within MPMX19_03471at 881.561 kb on - strand, within MPMX19_03471at 881.566 kb on + strand, within MPMX19_03471at 881.566 kb on + strand, within MPMX19_03471at 881.567 kb on - strand, within MPMX19_03471at 881.567 kb on - strand, within MPMX19_03471at 881.638 kb on + strand, within MPMX19_03471at 881.638 kb on + strand, within MPMX19_03471

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
879,244 + MPMX19_03468 0.72 -1.7
879,244 + MPMX19_03468 0.72 -0.1
879,244 + MPMX19_03468 0.72 -0.9
879,244 + MPMX19_03468 0.72 -0.8
879,244 + MPMX19_03468 0.72 -1.1
879,245 - MPMX19_03468 0.73 -1.8
879,245 - MPMX19_03468 0.73 +1.6
879,245 - MPMX19_03468 0.73 -1.5
879,245 - MPMX19_03468 0.73 -0.1
879,245 - MPMX19_03468 0.73 -0.7
879,245 - MPMX19_03468 0.73 -0.2
879,774 + MPMX19_03469 0.39 -1.0
879,774 + MPMX19_03469 0.39 +0.0
879,774 + MPMX19_03469 0.39 -1.4
879,774 + MPMX19_03469 0.39 -0.4
879,774 + MPMX19_03469 0.39 +0.6
879,774 + MPMX19_03469 0.39 -1.7
879,775 - MPMX19_03469 0.39 -0.5
879,969 + MPMX19_03469 0.68 +0.0
879,969 + MPMX19_03469 0.68 -0.4
879,970 - MPMX19_03469 0.68 -2.3
879,970 - MPMX19_03469 0.68 -1.6
880,068 + MPMX19_03469 0.83 -0.9
880,068 + MPMX19_03469 0.83 -0.2
880,068 + MPMX19_03469 0.83 +0.4
880,068 + MPMX19_03469 0.83 -0.9
880,068 + MPMX19_03469 0.83 -1.1
880,068 + MPMX19_03469 0.83 -1.6
880,069 - MPMX19_03469 0.83 -1.0
880,069 - MPMX19_03469 0.83 -2.3
880,069 - MPMX19_03469 0.83 -0.1
880,069 - MPMX19_03469 0.83 -1.6
880,069 - MPMX19_03469 0.83 -0.2
880,310 + MPMX19_03470 0.19 +0.5
880,310 + MPMX19_03470 0.19 -2.8
880,310 + MPMX19_03470 0.19 +1.6
880,311 - MPMX19_03470 0.19 -0.6
880,445 + MPMX19_03470 0.39 +0.0
880,445 + MPMX19_03470 0.39 -0.7
880,445 + MPMX19_03470 0.39 -0.4
880,446 - MPMX19_03470 0.39 -1.0
880,505 + MPMX19_03470 0.48 +0.5
880,559 + MPMX19_03470 0.56 -0.1
880,559 + MPMX19_03470 0.56 -1.6
880,560 - MPMX19_03470 0.56 -2.8
881,496 - MPMX19_03471 0.19 -1.5
881,497 + MPMX19_03471 0.19 +1.1
881,497 + MPMX19_03471 0.19 -0.5
881,497 + MPMX19_03471 0.19 -0.2
881,497 + MPMX19_03471 0.19 +0.5
881,497 + MPMX19_03471 0.19 -1.2
881,498 - MPMX19_03471 0.19 -0.4
881,560 + MPMX19_03471 0.21 -0.2
881,561 - MPMX19_03471 0.21 -0.5
881,566 + MPMX19_03471 0.21 +0.6
881,566 + MPMX19_03471 0.21 +0.0
881,567 - MPMX19_03471 0.21 -0.5
881,567 - MPMX19_03471 0.21 +0.0
881,638 + MPMX19_03471 0.23 +1.6
881,638 + MPMX19_03471 0.23 +0.6

Or see this region's nucleotide sequence