Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03465 and MPMX19_03466 are separated by 26 nucleotides MPMX19_03466 and MPMX19_03467 are separated by 74 nucleotides MPMX19_03467 and MPMX19_03468 are separated by 83 nucleotides
MPMX19_03465: MPMX19_03465 - Acetyl-CoA acetyltransferase, at 875,211 to 876,386
_03465
MPMX19_03466: MPMX19_03466 - hypothetical protein, at 876,413 to 876,685
_03466
MPMX19_03467: MPMX19_03467 - Methyl-accepting chemotaxis protein, at 876,760 to 878,451
_03467
MPMX19_03468: MPMX19_03468 - hypothetical protein, at 878,535 to 879,512
_03468
Position (kb)
876
877
878
879 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 876.448 kb on + strand, within MPMX19_03466 at 876.449 kb on - strand, within MPMX19_03466 at 876.449 kb on - strand, within MPMX19_03466 at 876.449 kb on - strand, within MPMX19_03466 at 876.449 kb on - strand, within MPMX19_03466 at 876.463 kb on + strand, within MPMX19_03466 at 876.464 kb on - strand, within MPMX19_03466 at 876.464 kb on - strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.466 kb on + strand, within MPMX19_03466 at 876.467 kb on - strand, within MPMX19_03466 at 876.467 kb on - strand, within MPMX19_03466 at 876.467 kb on - strand, within MPMX19_03466 at 876.467 kb on - strand, within MPMX19_03466 at 876.467 kb on - strand, within MPMX19_03466 at 876.470 kb on - strand, within MPMX19_03466 at 876.470 kb on - strand, within MPMX19_03466 at 876.470 kb on - strand, within MPMX19_03466 at 876.470 kb on - strand, within MPMX19_03466 at 876.683 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.755 kb on + strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 876.756 kb on - strand at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.033 kb on + strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.034 kb on - strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.132 kb on + strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.133 kb on - strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.189 kb on + strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.190 kb on - strand, within MPMX19_03467 at 877.228 kb on + strand, within MPMX19_03467 at 877.228 kb on + strand, within MPMX19_03467 at 877.228 kb on + strand, within MPMX19_03467 at 877.228 kb on + strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.229 kb on - strand, within MPMX19_03467 at 877.244 kb on - strand, within MPMX19_03467 at 877.244 kb on - strand, within MPMX19_03467 at 877.244 kb on - strand, within MPMX19_03467 at 877.244 kb on - strand, within MPMX19_03467 at 877.244 kb on - strand, within MPMX19_03467 at 877.291 kb on + strand, within MPMX19_03467 at 877.291 kb on + strand, within MPMX19_03467 at 877.292 kb on - strand, within MPMX19_03467 at 877.292 kb on - strand, within MPMX19_03467 at 878.463 kb on + strand at 878.548 kb on + strand at 878.549 kb on - strand at 878.549 kb on - strand at 878.875 kb on + strand, within MPMX19_03468 at 878.875 kb on + strand, within MPMX19_03468 at 878.875 kb on + strand, within MPMX19_03468 at 878.875 kb on + strand, within MPMX19_03468 at 878.875 kb on + strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.876 kb on - strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.914 kb on + strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.915 kb on - strand, within MPMX19_03468 at 878.945 kb on - strand, within MPMX19_03468 at 878.945 kb on - strand, within MPMX19_03468 at 878.945 kb on - strand, within MPMX19_03468 at 878.992 kb on + strand, within MPMX19_03468 at 878.993 kb on - strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.094 kb on + strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.095 kb on - strand, within MPMX19_03468 at 879.124 kb on + strand, within MPMX19_03468 at 879.124 kb on + strand, within MPMX19_03468 at 879.125 kb on - strand, within MPMX19_03468 at 879.148 kb on + strand, within MPMX19_03468 at 879.148 kb on + strand, within MPMX19_03468 at 879.148 kb on + strand, within MPMX19_03468 at 879.149 kb on - strand, within MPMX19_03468 at 879.149 kb on - strand, within MPMX19_03468 at 879.244 kb on + strand, within MPMX19_03468 at 879.244 kb on + strand, within MPMX19_03468 at 879.244 kb on + strand, within MPMX19_03468 at 879.244 kb on + strand, within MPMX19_03468 at 879.244 kb on + strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468 at 879.245 kb on - strand, within MPMX19_03468
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 876,448 + MPMX19_03466 0.13 -0.4 876,449 - MPMX19_03466 0.13 -0.0 876,449 - MPMX19_03466 0.13 -0.5 876,449 - MPMX19_03466 0.13 -0.4 876,449 - MPMX19_03466 0.13 -0.5 876,463 + MPMX19_03466 0.18 -1.3 876,464 - MPMX19_03466 0.19 +0.2 876,464 - MPMX19_03466 0.19 -0.7 876,466 + MPMX19_03466 0.19 -0.8 876,466 + MPMX19_03466 0.19 -2.5 876,466 + MPMX19_03466 0.19 -0.8 876,466 + MPMX19_03466 0.19 -2.0 876,466 + MPMX19_03466 0.19 +0.3 876,466 + MPMX19_03466 0.19 -0.4 876,466 + MPMX19_03466 0.19 -0.1 876,467 - MPMX19_03466 0.20 -0.4 876,467 - MPMX19_03466 0.20 -2.5 876,467 - MPMX19_03466 0.20 -1.0 876,467 - MPMX19_03466 0.20 -1.2 876,467 - MPMX19_03466 0.20 -0.4 876,470 - MPMX19_03466 0.21 +0.1 876,470 - MPMX19_03466 0.21 -1.4 876,470 - MPMX19_03466 0.21 -0.2 876,470 - MPMX19_03466 0.21 +0.6 876,683 + +0.6 876,755 + +0.6 876,755 + +0.9 876,755 + -0.8 876,755 + -0.5 876,755 + -1.0 876,755 + -1.5 876,755 + -0.3 876,755 + -0.2 876,755 + -0.8 876,755 + -1.8 876,756 - -1.4 876,756 - -1.2 876,756 - -1.5 876,756 - -0.7 876,756 - -1.0 876,756 - -1.2 876,756 - -0.4 876,756 - -0.5 876,756 - -1.0 876,756 - +0.2 876,756 - -0.4 876,756 - -1.0 876,756 - -0.3 877,033 + MPMX19_03467 0.16 -0.5 877,033 + MPMX19_03467 0.16 -1.0 877,033 + MPMX19_03467 0.16 -0.7 877,033 + MPMX19_03467 0.16 +0.6 877,033 + MPMX19_03467 0.16 -0.9 877,033 + MPMX19_03467 0.16 -0.5 877,033 + MPMX19_03467 0.16 -1.7 877,033 + MPMX19_03467 0.16 -0.1 877,033 + MPMX19_03467 0.16 -2.0 877,033 + MPMX19_03467 0.16 -0.7 877,033 + MPMX19_03467 0.16 -1.1 877,033 + MPMX19_03467 0.16 -1.0 877,033 + MPMX19_03467 0.16 -0.9 877,034 - MPMX19_03467 0.16 -0.1 877,034 - MPMX19_03467 0.16 -1.0 877,034 - MPMX19_03467 0.16 -1.4 877,034 - MPMX19_03467 0.16 +1.1 877,034 - MPMX19_03467 0.16 -0.2 877,034 - MPMX19_03467 0.16 -1.5 877,034 - MPMX19_03467 0.16 -1.6 877,034 - MPMX19_03467 0.16 -0.8 877,132 + MPMX19_03467 0.22 -0.2 877,132 + MPMX19_03467 0.22 +0.4 877,132 + MPMX19_03467 0.22 +0.1 877,132 + MPMX19_03467 0.22 -0.1 877,132 + MPMX19_03467 0.22 -0.4 877,132 + MPMX19_03467 0.22 -0.3 877,132 + MPMX19_03467 0.22 -1.4 877,132 + MPMX19_03467 0.22 -1.0 877,132 + MPMX19_03467 0.22 -1.0 877,133 - MPMX19_03467 0.22 -0.4 877,133 - MPMX19_03467 0.22 -0.8 877,133 - MPMX19_03467 0.22 -0.4 877,133 - MPMX19_03467 0.22 -0.8 877,133 - MPMX19_03467 0.22 +0.7 877,133 - MPMX19_03467 0.22 +0.5 877,133 - MPMX19_03467 0.22 -0.3 877,133 - MPMX19_03467 0.22 -1.2 877,189 + MPMX19_03467 0.25 +0.1 877,189 + MPMX19_03467 0.25 +0.3 877,189 + MPMX19_03467 0.25 +0.7 877,189 + MPMX19_03467 0.25 -0.3 877,189 + MPMX19_03467 0.25 -1.8 877,189 + MPMX19_03467 0.25 -0.9 877,189 + MPMX19_03467 0.25 -0.7 877,190 - MPMX19_03467 0.25 -0.2 877,190 - MPMX19_03467 0.25 -1.2 877,190 - MPMX19_03467 0.25 -2.0 877,190 - MPMX19_03467 0.25 +0.1 877,190 - MPMX19_03467 0.25 +0.3 877,190 - MPMX19_03467 0.25 -0.1 877,190 - MPMX19_03467 0.25 -0.1 877,228 + MPMX19_03467 0.28 +0.5 877,228 + MPMX19_03467 0.28 -1.3 877,228 + MPMX19_03467 0.28 +0.6 877,228 + MPMX19_03467 0.28 +0.9 877,229 - MPMX19_03467 0.28 -1.6 877,229 - MPMX19_03467 0.28 +0.0 877,229 - MPMX19_03467 0.28 -0.5 877,229 - MPMX19_03467 0.28 +0.6 877,229 - MPMX19_03467 0.28 -0.7 877,229 - MPMX19_03467 0.28 +0.6 877,244 - MPMX19_03467 0.29 -1.2 877,244 - MPMX19_03467 0.29 -1.1 877,244 - MPMX19_03467 0.29 -1.2 877,244 - MPMX19_03467 0.29 +0.5 877,244 - MPMX19_03467 0.29 +0.6 877,291 + MPMX19_03467 0.31 -1.3 877,291 + MPMX19_03467 0.31 -0.7 877,292 - MPMX19_03467 0.31 -0.4 877,292 - MPMX19_03467 0.31 -0.7 878,463 + -0.1 878,548 + +0.2 878,549 - +0.4 878,549 - +0.7 878,875 + MPMX19_03468 0.35 +0.1 878,875 + MPMX19_03468 0.35 -1.0 878,875 + MPMX19_03468 0.35 +0.2 878,875 + MPMX19_03468 0.35 -0.5 878,875 + MPMX19_03468 0.35 +1.4 878,876 - MPMX19_03468 0.35 -1.1 878,876 - MPMX19_03468 0.35 -0.7 878,876 - MPMX19_03468 0.35 +0.0 878,876 - MPMX19_03468 0.35 -0.3 878,876 - MPMX19_03468 0.35 +0.4 878,876 - MPMX19_03468 0.35 -0.6 878,876 - MPMX19_03468 0.35 -0.2 878,876 - MPMX19_03468 0.35 -0.3 878,876 - MPMX19_03468 0.35 -0.7 878,876 - MPMX19_03468 0.35 -3.0 878,876 - MPMX19_03468 0.35 -0.6 878,914 + MPMX19_03468 0.39 -0.5 878,914 + MPMX19_03468 0.39 -2.2 878,914 + MPMX19_03468 0.39 +0.2 878,914 + MPMX19_03468 0.39 -2.8 878,914 + MPMX19_03468 0.39 -0.6 878,914 + MPMX19_03468 0.39 -1.3 878,914 + MPMX19_03468 0.39 -1.4 878,915 - MPMX19_03468 0.39 -0.5 878,915 - MPMX19_03468 0.39 +1.4 878,915 - MPMX19_03468 0.39 -1.6 878,915 - MPMX19_03468 0.39 +0.6 878,915 - MPMX19_03468 0.39 -0.5 878,915 - MPMX19_03468 0.39 +0.0 878,915 - MPMX19_03468 0.39 -0.6 878,915 - MPMX19_03468 0.39 +0.2 878,915 - MPMX19_03468 0.39 +1.4 878,945 - MPMX19_03468 0.42 +0.6 878,945 - MPMX19_03468 0.42 -0.4 878,945 - MPMX19_03468 0.42 -0.6 878,992 + MPMX19_03468 0.47 -0.8 878,993 - MPMX19_03468 0.47 -1.6 879,094 + MPMX19_03468 0.57 +1.4 879,094 + MPMX19_03468 0.57 -1.0 879,094 + MPMX19_03468 0.57 -0.3 879,094 + MPMX19_03468 0.57 -0.7 879,094 + MPMX19_03468 0.57 -1.7 879,094 + MPMX19_03468 0.57 -1.1 879,095 - MPMX19_03468 0.57 +0.2 879,095 - MPMX19_03468 0.57 -0.7 879,095 - MPMX19_03468 0.57 -2.6 879,095 - MPMX19_03468 0.57 +0.1 879,095 - MPMX19_03468 0.57 -0.5 879,095 - MPMX19_03468 0.57 -1.3 879,095 - MPMX19_03468 0.57 +1.3 879,095 - MPMX19_03468 0.57 +0.1 879,095 - MPMX19_03468 0.57 +0.6 879,095 - MPMX19_03468 0.57 -0.4 879,095 - MPMX19_03468 0.57 -0.4 879,095 - MPMX19_03468 0.57 -1.0 879,095 - MPMX19_03468 0.57 +0.3 879,124 + MPMX19_03468 0.60 -1.2 879,124 + MPMX19_03468 0.60 +0.0 879,125 - MPMX19_03468 0.60 +0.5 879,148 + MPMX19_03468 0.63 -0.9 879,148 + MPMX19_03468 0.63 -1.7 879,148 + MPMX19_03468 0.63 -1.2 879,149 - MPMX19_03468 0.63 +1.1 879,149 - MPMX19_03468 0.63 -0.9 879,244 + MPMX19_03468 0.72 -1.7 879,244 + MPMX19_03468 0.72 -0.1 879,244 + MPMX19_03468 0.72 -0.9 879,244 + MPMX19_03468 0.72 -0.8 879,244 + MPMX19_03468 0.72 -1.1 879,245 - MPMX19_03468 0.73 -1.8 879,245 - MPMX19_03468 0.73 +1.6 879,245 - MPMX19_03468 0.73 -1.5 879,245 - MPMX19_03468 0.73 -0.1 879,245 - MPMX19_03468 0.73 -0.7 879,245 - MPMX19_03468 0.73 -0.2
Or see this region's nucleotide sequence