Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03457

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03455 and MPMX19_03456 are separated by 264 nucleotidesMPMX19_03456 and MPMX19_03457 are separated by 11 nucleotidesMPMX19_03457 and MPMX19_03458 are separated by 291 nucleotides MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874 _03455 MPMX19_03456: MPMX19_03456 - hypothetical protein, at 853,139 to 853,303 _03456 MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117 _03457 MPMX19_03458: MPMX19_03458 - hypothetical protein, at 855,409 to 856,488 _03458 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.872 kb on + strandat 852.872 kb on + strandat 852.872 kb on + strandat 853.301 kb on + strandat 853.302 kb on - strandat 853.302 kb on - strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.323 kb on + strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.324 kb on - strandat 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.655 kb on + strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.656 kb on - strand, within MPMX19_03457at 853.728 kb on + strand, within MPMX19_03457at 853.728 kb on + strand, within MPMX19_03457at 853.859 kb on + strand, within MPMX19_03457at 853.860 kb on - strand, within MPMX19_03457at 853.926 kb on + strand, within MPMX19_03457at 853.926 kb on + strand, within MPMX19_03457at 853.927 kb on - strand, within MPMX19_03457at 853.927 kb on - strand, within MPMX19_03457at 853.927 kb on - strand, within MPMX19_03457at 853.927 kb on - strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.082 kb on + strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.083 kb on - strand, within MPMX19_03457at 854.165 kb on + strand, within MPMX19_03457at 854.166 kb on - strand, within MPMX19_03457at 854.198 kb on + strand, within MPMX19_03457at 854.199 kb on - strand, within MPMX19_03457at 854.199 kb on - strand, within MPMX19_03457at 854.199 kb on - strand, within MPMX19_03457at 854.199 kb on - strand, within MPMX19_03457at 854.564 kb on + strand, within MPMX19_03457at 854.564 kb on + strand, within MPMX19_03457at 854.565 kb on - strand, within MPMX19_03457at 854.882 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.912 kb on + strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 854.913 kb on - strand, within MPMX19_03457at 855.117 kb on + strandat 855.117 kb on + strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.140 kb on + strandat 855.140 kb on + strandat 855.140 kb on + strandat 855.140 kb on + strandat 855.140 kb on + strandat 855.141 kb on - strandat 855.141 kb on - strandat 855.141 kb on - strandat 855.141 kb on - strandat 855.141 kb on - strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.170 kb on + strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.171 kb on - strandat 855.177 kb on - strandat 855.177 kb on - strandat 855.177 kb on - strandat 855.244 kb on + strandat 855.244 kb on + strandat 855.245 kb on - strandat 855.245 kb on - strandat 855.245 kb on - strandat 855.245 kb on - strandat 855.245 kb on - strandat 855.331 kb on + strandat 855.366 kb on - strandat 855.462 kb on + strandat 855.462 kb on + strandat 855.462 kb on + strandat 855.463 kb on - strandat 855.463 kb on - strandat 855.463 kb on - strandat 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.520 kb on + strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.521 kb on - strand, within MPMX19_03458at 855.690 kb on + strand, within MPMX19_03458at 855.690 kb on + strand, within MPMX19_03458at 855.690 kb on + strand, within MPMX19_03458at 855.691 kb on - strand, within MPMX19_03458at 855.715 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.733 kb on + strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458at 855.734 kb on - strand, within MPMX19_03458

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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852,642 - MPMX19_03455 0.68 -0.9
852,642 - MPMX19_03455 0.68 +0.0
852,642 - MPMX19_03455 0.68 -0.4
852,642 - MPMX19_03455 0.68 -0.6
852,872 + -2.0
852,872 + -1.4
852,872 + -0.7
853,301 + -1.6
853,302 - -1.4
853,302 - -0.4
853,323 + -0.1
853,323 + +0.3
853,323 + -0.7
853,323 + -0.6
853,323 + +0.0
853,323 + -0.5
853,323 + -0.2
853,324 - +0.3
853,324 - -0.8
853,324 - -0.4
853,324 - +2.0
853,655 + MPMX19_03457 0.19 +0.4
853,655 + MPMX19_03457 0.19 -1.0
853,655 + MPMX19_03457 0.19 -0.9
853,655 + MPMX19_03457 0.19 -0.5
853,655 + MPMX19_03457 0.19 -0.2
853,655 + MPMX19_03457 0.19 +0.6
853,655 + MPMX19_03457 0.19 -0.4
853,655 + MPMX19_03457 0.19 -0.6
853,655 + MPMX19_03457 0.19 -0.4
853,655 + MPMX19_03457 0.19 -2.0
853,655 + MPMX19_03457 0.19 +0.4
853,656 - MPMX19_03457 0.19 -0.1
853,656 - MPMX19_03457 0.19 -1.4
853,656 - MPMX19_03457 0.19 -0.1
853,656 - MPMX19_03457 0.19 -1.4
853,728 + MPMX19_03457 0.23 +0.3
853,728 + MPMX19_03457 0.23 -0.0
853,859 + MPMX19_03457 0.30 -0.0
853,860 - MPMX19_03457 0.30 -2.8
853,926 + MPMX19_03457 0.34 +0.6
853,926 + MPMX19_03457 0.34 -0.2
853,927 - MPMX19_03457 0.34 -1.4
853,927 - MPMX19_03457 0.34 -1.1
853,927 - MPMX19_03457 0.34 +0.2
853,927 - MPMX19_03457 0.34 -0.3
854,082 + MPMX19_03457 0.43 -0.0
854,082 + MPMX19_03457 0.43 -0.7
854,082 + MPMX19_03457 0.43 +1.0
854,082 + MPMX19_03457 0.43 +0.0
854,082 + MPMX19_03457 0.43 -0.8
854,082 + MPMX19_03457 0.43 -0.9
854,083 - MPMX19_03457 0.43 -1.4
854,083 - MPMX19_03457 0.43 -0.6
854,083 - MPMX19_03457 0.43 -0.5
854,083 - MPMX19_03457 0.43 -0.1
854,083 - MPMX19_03457 0.43 +0.4
854,083 - MPMX19_03457 0.43 +0.2
854,083 - MPMX19_03457 0.43 -1.8
854,083 - MPMX19_03457 0.43 +0.0
854,165 + MPMX19_03457 0.47 +0.0
854,166 - MPMX19_03457 0.47 +0.0
854,198 + MPMX19_03457 0.49 -0.5
854,199 - MPMX19_03457 0.49 -1.6
854,199 - MPMX19_03457 0.49 +0.5
854,199 - MPMX19_03457 0.49 -2.0
854,199 - MPMX19_03457 0.49 -0.2
854,564 + MPMX19_03457 0.69 -0.1
854,564 + MPMX19_03457 0.69 -1.4
854,565 - MPMX19_03457 0.69 +1.1
854,882 + MPMX19_03457 0.87 +1.1
854,912 + MPMX19_03457 0.89 -2.7
854,912 + MPMX19_03457 0.89 -0.7
854,912 + MPMX19_03457 0.89 -2.2
854,912 + MPMX19_03457 0.89 -1.5
854,912 + MPMX19_03457 0.89 -1.2
854,912 + MPMX19_03457 0.89 -1.4
854,913 - MPMX19_03457 0.89 -0.6
854,913 - MPMX19_03457 0.89 +0.0
854,913 - MPMX19_03457 0.89 -0.2
854,913 - MPMX19_03457 0.89 +0.6
854,913 - MPMX19_03457 0.89 +1.0
854,913 - MPMX19_03457 0.89 -0.5
855,117 + -1.3
855,117 + -0.2
855,118 - -0.2
855,118 - +0.0
855,118 - -0.4
855,118 - +1.1
855,118 - +0.2
855,140 + -0.2
855,140 + +0.1
855,140 + -0.7
855,140 + -1.5
855,140 + -0.5
855,141 - -1.4
855,141 - -0.6
855,141 - +0.3
855,141 - -0.4
855,141 - +1.0
855,170 + +0.2
855,170 + -0.4
855,170 + -0.4
855,170 + -1.7
855,170 + +0.0
855,170 + -2.2
855,170 + +0.6
855,171 - +1.4
855,171 - -1.2
855,171 - +0.7
855,171 - -0.2
855,171 - -1.2
855,171 - +0.7
855,171 - -0.6
855,171 - -2.6
855,177 - +0.9
855,177 - -0.4
855,177 - -0.4
855,244 + -1.4
855,244 + -0.5
855,245 - -0.8
855,245 - -0.9
855,245 - -1.1
855,245 - -1.2
855,245 - -0.7
855,331 + +0.8
855,366 - -0.7
855,462 + -0.6
855,462 + -0.7
855,462 + +0.3
855,463 - -1.5
855,463 - -2.1
855,463 - -0.8
855,520 + MPMX19_03458 0.10 +0.8
855,520 + MPMX19_03458 0.10 -1.8
855,520 + MPMX19_03458 0.10 -0.4
855,520 + MPMX19_03458 0.10 -1.0
855,520 + MPMX19_03458 0.10 +3.6
855,520 + MPMX19_03458 0.10 -1.7
855,520 + MPMX19_03458 0.10 +0.3
855,520 + MPMX19_03458 0.10 +0.3
855,521 - MPMX19_03458 0.10 -0.6
855,521 - MPMX19_03458 0.10 -1.3
855,521 - MPMX19_03458 0.10 +0.9
855,521 - MPMX19_03458 0.10 -1.6
855,521 - MPMX19_03458 0.10 +0.0
855,521 - MPMX19_03458 0.10 -0.5
855,690 + MPMX19_03458 0.26 -1.0
855,690 + MPMX19_03458 0.26 -0.2
855,690 + MPMX19_03458 0.26 +2.4
855,691 - MPMX19_03458 0.26 -0.8
855,715 + MPMX19_03458 0.28 -0.8
855,733 + MPMX19_03458 0.30 -0.2
855,733 + MPMX19_03458 0.30 -1.1
855,733 + MPMX19_03458 0.30 -0.6
855,733 + MPMX19_03458 0.30 +0.3
855,733 + MPMX19_03458 0.30 -0.7
855,733 + MPMX19_03458 0.30 +0.6
855,733 + MPMX19_03458 0.30 -0.4
855,733 + MPMX19_03458 0.30 +0.4
855,733 + MPMX19_03458 0.30 +0.8
855,733 + MPMX19_03458 0.30 -0.6
855,733 + MPMX19_03458 0.30 -0.4
855,733 + MPMX19_03458 0.30 -0.6
855,733 + MPMX19_03458 0.30 -1.9
855,734 - MPMX19_03458 0.30 +0.8
855,734 - MPMX19_03458 0.30 -2.1
855,734 - MPMX19_03458 0.30 -1.2
855,734 - MPMX19_03458 0.30 +1.6
855,734 - MPMX19_03458 0.30 -1.7
855,734 - MPMX19_03458 0.30 +0.4
855,734 - MPMX19_03458 0.30 +0.0
855,734 - MPMX19_03458 0.30 -1.4
855,734 - MPMX19_03458 0.30 -0.7
855,734 - MPMX19_03458 0.30 -0.3
855,734 - MPMX19_03458 0.30 -0.7
855,734 - MPMX19_03458 0.30 -1.8
855,734 - MPMX19_03458 0.30 +0.3
855,734 - MPMX19_03458 0.30 +0.1
855,734 - MPMX19_03458 0.30 +0.5

Or see this region's nucleotide sequence