Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03454

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03453 and MPMX19_03454 are separated by 67 nucleotidesMPMX19_03454 and MPMX19_03455 are separated by 205 nucleotides MPMX19_03453: MPMX19_03453 - Putative aliphatic sulfonates-binding protein, at 850,029 to 851,048 _03453 MPMX19_03454: MPMX19_03454 - Nitrate import ATP-binding protein NrtC, at 851,116 to 851,949 _03454 MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874 _03455 Position (kb) 851 852Strain fitness (log2 ratio) -2 -1 0 1at 850.221 kb on - strand, within MPMX19_03453at 850.353 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.709 kb on - strand, within MPMX19_03453at 850.709 kb on - strand, within MPMX19_03453at 850.760 kb on - strand, within MPMX19_03453at 850.760 kb on - strand, within MPMX19_03453at 850.779 kb on - strand, within MPMX19_03453at 850.779 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 851.008 kb on + strandat 851.008 kb on + strandat 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.651 kb on + strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.652 kb on - strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.843 kb on + strand, within MPMX19_03454at 851.844 kb on - strand, within MPMX19_03454at 852.189 kb on - strandat 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.642 kb on - strand, within MPMX19_03455at 852.872 kb on + strandat 852.872 kb on + strandat 852.872 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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850,221 - MPMX19_03453 0.19 +0.2
850,353 - MPMX19_03453 0.32 -0.6
850,388 - MPMX19_03453 0.35 -0.4
850,388 - MPMX19_03453 0.35 -0.0
850,388 - MPMX19_03453 0.35 -1.9
850,709 - MPMX19_03453 0.67 -1.6
850,709 - MPMX19_03453 0.67 -1.6
850,760 - MPMX19_03453 0.72 -2.0
850,760 - MPMX19_03453 0.72 -1.6
850,779 - MPMX19_03453 0.74 -1.0
850,779 - MPMX19_03453 0.74 +0.3
850,874 - MPMX19_03453 0.83 -0.2
850,874 - MPMX19_03453 0.83 -1.4
850,874 - MPMX19_03453 0.83 +0.4
850,874 - MPMX19_03453 0.83 -1.2
851,008 + -1.3
851,008 + +0.6
851,651 + MPMX19_03454 0.64 -0.4
851,651 + MPMX19_03454 0.64 -0.7
851,651 + MPMX19_03454 0.64 -2.0
851,651 + MPMX19_03454 0.64 -1.0
851,651 + MPMX19_03454 0.64 -0.1
851,651 + MPMX19_03454 0.64 +0.1
851,652 - MPMX19_03454 0.64 -0.8
851,652 - MPMX19_03454 0.64 -1.9
851,652 - MPMX19_03454 0.64 -0.8
851,843 + MPMX19_03454 0.87 -2.4
851,843 + MPMX19_03454 0.87 -1.1
851,843 + MPMX19_03454 0.87 -1.3
851,844 - MPMX19_03454 0.87 -0.7
852,189 - -0.8
852,642 - MPMX19_03455 0.68 -0.9
852,642 - MPMX19_03455 0.68 +0.0
852,642 - MPMX19_03455 0.68 -0.4
852,642 - MPMX19_03455 0.68 -0.6
852,872 + -2.0
852,872 + -1.4
852,872 + -0.7

Or see this region's nucleotide sequence