Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03448 and MPMX19_03449 are separated by 211 nucleotides MPMX19_03449 and MPMX19_03450 are separated by 192 nucleotides MPMX19_03450 and MPMX19_03451 are separated by 137 nucleotides
MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423
_03448
MPMX19_03449: MPMX19_03449 - hypothetical protein, at 845,635 to 846,339
_03449
MPMX19_03450: MPMX19_03450 - hypothetical protein, at 846,532 to 846,750
_03450
MPMX19_03451: MPMX19_03451 - hypothetical protein, at 846,888 to 849,251
_03451
Position (kb)
845
846
847 Strain fitness (log2 ratio)
-2
-1
0
1 at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.689 kb on - strand at 844.689 kb on - strand at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.905 kb on + strand, within MPMX19_03448 at 844.950 kb on + strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.170 kb on - strand, within MPMX19_03448 at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.585 kb on - strand at 845.585 kb on - strand at 845.782 kb on + strand, within MPMX19_03449 at 845.783 kb on - strand, within MPMX19_03449 at 845.818 kb on + strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.908 kb on + strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 846.029 kb on - strand, within MPMX19_03449 at 846.034 kb on + strand, within MPMX19_03449 at 846.035 kb on - strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.337 kb on + strand at 846.338 kb on - strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.375 kb on - strand at 846.375 kb on - strand at 846.423 kb on + strand at 846.423 kb on + strand at 846.424 kb on - strand at 846.433 kb on + strand at 846.433 kb on + strand at 846.433 kb on + strand at 846.434 kb on - strand at 846.434 kb on - strand at 846.434 kb on - strand at 846.455 kb on + strand at 846.456 kb on - strand at 846.456 kb on - strand at 846.646 kb on + strand, within MPMX19_03450 at 846.647 kb on - strand, within MPMX19_03450 at 846.647 kb on - strand, within MPMX19_03450 at 846.647 kb on - strand, within MPMX19_03450 at 846.647 kb on - strand, within MPMX19_03450 at 847.143 kb on + strand, within MPMX19_03451 at 847.143 kb on + strand, within MPMX19_03451 at 847.144 kb on - strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.201 kb on + strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451 at 847.202 kb on - strand, within MPMX19_03451
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 844,688 + +1.3 844,688 + +0.2 844,688 + -1.6 844,688 + +0.9 844,688 + +0.0 844,689 - -0.3 844,689 - -0.7 844,878 + MPMX19_03448 0.32 +1.0 844,878 + MPMX19_03448 0.32 +0.0 844,878 + MPMX19_03448 0.32 -2.0 844,905 + MPMX19_03448 0.36 +0.9 844,950 + MPMX19_03448 0.41 +0.0 844,951 - MPMX19_03448 0.41 -2.5 844,951 - MPMX19_03448 0.41 -0.1 845,025 + MPMX19_03448 0.51 -1.4 845,025 + MPMX19_03448 0.51 -0.1 845,026 - MPMX19_03448 0.51 -0.7 845,026 - MPMX19_03448 0.51 -0.2 845,026 - MPMX19_03448 0.51 -0.1 845,026 - MPMX19_03448 0.51 -1.4 845,026 - MPMX19_03448 0.51 -1.6 845,169 + MPMX19_03448 0.68 -1.7 845,169 + MPMX19_03448 0.68 -2.2 845,169 + MPMX19_03448 0.68 +0.4 845,170 - MPMX19_03448 0.69 +1.0 845,357 + +0.2 845,357 + -0.8 845,357 + -2.1 845,357 + -1.6 845,357 + -1.1 845,357 + -1.5 845,357 + -1.1 845,357 + -2.7 845,358 - -0.0 845,358 - -1.1 845,358 - +0.0 845,358 - -0.4 845,358 - -1.0 845,534 + -0.2 845,534 + -0.4 845,534 + -1.2 845,535 - +1.1 845,535 - +0.8 845,584 + -1.3 845,584 + -0.4 845,584 + -0.3 845,584 + -0.2 845,585 - -1.5 845,585 - +0.4 845,782 + MPMX19_03449 0.21 -0.4 845,783 - MPMX19_03449 0.21 -0.2 845,818 + MPMX19_03449 0.26 +0.6 845,819 - MPMX19_03449 0.26 -1.6 845,819 - MPMX19_03449 0.26 -0.1 845,851 + MPMX19_03449 0.31 -0.6 845,851 + MPMX19_03449 0.31 -0.6 845,851 + MPMX19_03449 0.31 -1.2 845,908 + MPMX19_03449 0.39 -0.3 845,909 - MPMX19_03449 0.39 +0.2 845,909 - MPMX19_03449 0.39 -0.4 846,029 - MPMX19_03449 0.56 -0.7 846,034 + MPMX19_03449 0.57 -0.0 846,035 - MPMX19_03449 0.57 -0.4 846,067 + MPMX19_03449 0.61 -1.2 846,067 + MPMX19_03449 0.61 +0.6 846,145 + MPMX19_03449 0.72 -0.7 846,145 + MPMX19_03449 0.72 -1.6 846,145 + MPMX19_03449 0.72 -0.8 846,145 + MPMX19_03449 0.72 -0.3 846,145 + MPMX19_03449 0.72 -0.6 846,145 + MPMX19_03449 0.72 -0.9 846,146 - MPMX19_03449 0.72 +0.6 846,146 - MPMX19_03449 0.72 -1.7 846,146 - MPMX19_03449 0.72 -0.4 846,146 - MPMX19_03449 0.72 -1.7 846,146 - MPMX19_03449 0.72 -0.4 846,146 - MPMX19_03449 0.72 -1.0 846,154 + MPMX19_03449 0.74 -1.0 846,154 + MPMX19_03449 0.74 +0.6 846,154 + MPMX19_03449 0.74 -2.7 846,154 + MPMX19_03449 0.74 -1.0 846,154 + MPMX19_03449 0.74 +1.0 846,154 + MPMX19_03449 0.74 -0.6 846,154 + MPMX19_03449 0.74 +0.6 846,155 - MPMX19_03449 0.74 -0.5 846,155 - MPMX19_03449 0.74 -2.2 846,337 + +0.4 846,338 - -0.6 846,374 + -2.6 846,374 + -0.4 846,374 + -1.2 846,374 + -1.4 846,374 + -1.0 846,375 - -1.4 846,375 - +0.8 846,423 + -0.9 846,423 + -0.7 846,424 - -0.1 846,433 + -1.8 846,433 + -0.6 846,433 + +0.0 846,434 - -0.4 846,434 - +1.0 846,434 - -2.2 846,455 + -0.4 846,456 - -0.5 846,456 - +0.8 846,646 + MPMX19_03450 0.52 +0.4 846,647 - MPMX19_03450 0.53 -0.3 846,647 - MPMX19_03450 0.53 -1.7 846,647 - MPMX19_03450 0.53 -0.4 846,647 - MPMX19_03450 0.53 +0.6 847,143 + MPMX19_03451 0.11 -0.1 847,143 + MPMX19_03451 0.11 -0.6 847,144 - MPMX19_03451 0.11 -0.0 847,201 + MPMX19_03451 0.13 -0.6 847,201 + MPMX19_03451 0.13 -0.1 847,201 + MPMX19_03451 0.13 -0.1 847,201 + MPMX19_03451 0.13 -1.6 847,201 + MPMX19_03451 0.13 +0.9 847,201 + MPMX19_03451 0.13 -0.8 847,201 + MPMX19_03451 0.13 -1.7 847,201 + MPMX19_03451 0.13 +1.4 847,201 + MPMX19_03451 0.13 -0.4 847,201 + MPMX19_03451 0.13 -1.2 847,201 + MPMX19_03451 0.13 -0.2 847,201 + MPMX19_03451 0.13 +0.3 847,202 - MPMX19_03451 0.13 +0.6 847,202 - MPMX19_03451 0.13 -1.3 847,202 - MPMX19_03451 0.13 -2.3 847,202 - MPMX19_03451 0.13 +0.2 847,202 - MPMX19_03451 0.13 -1.2 847,202 - MPMX19_03451 0.13 -0.6 847,202 - MPMX19_03451 0.13 -0.9 847,202 - MPMX19_03451 0.13 -0.7 847,202 - MPMX19_03451 0.13 -0.6 847,202 - MPMX19_03451 0.13 -0.4 847,202 - MPMX19_03451 0.13 +0.3 847,202 - MPMX19_03451 0.13 -0.2 847,202 - MPMX19_03451 0.13 +0.3 847,202 - MPMX19_03451 0.13 -0.8 847,202 - MPMX19_03451 0.13 +0.5
Or see this region's nucleotide sequence