Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03435

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03434 and MPMX19_03435 are separated by 16 nucleotidesMPMX19_03435 and MPMX19_03436 are separated by 15 nucleotides MPMX19_03434: MPMX19_03434 - hypothetical protein, at 826,007 to 827,350 _03434 MPMX19_03435: MPMX19_03435 - hypothetical protein, at 827,367 to 828,263 _03435 MPMX19_03436: MPMX19_03436 - hypothetical protein, at 828,279 to 832,529 _03436 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.811 kb on + strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.812 kb on - strand, within MPMX19_03434at 826.886 kb on + strand, within MPMX19_03434at 826.887 kb on - strand, within MPMX19_03434at 826.914 kb on - strand, within MPMX19_03434at 827.256 kb on - strandat 827.256 kb on - strandat 827.256 kb on - strandat 827.724 kb on + strand, within MPMX19_03435at 827.724 kb on + strand, within MPMX19_03435at 827.724 kb on + strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.725 kb on - strand, within MPMX19_03435at 827.913 kb on + strand, within MPMX19_03435at 827.914 kb on - strand, within MPMX19_03435at 827.914 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.079 kb on - strand, within MPMX19_03435at 828.284 kb on + strandat 828.284 kb on + strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.285 kb on - strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.585 kb on + strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.586 kb on - strandat 828.600 kb on + strandat 828.714 kb on + strand, within MPMX19_03436at 828.714 kb on + strand, within MPMX19_03436at 828.715 kb on - strand, within MPMX19_03436at 828.716 kb on - strand, within MPMX19_03436at 828.885 kb on + strand, within MPMX19_03436at 828.885 kb on + strand, within MPMX19_03436at 828.885 kb on + strand, within MPMX19_03436at 828.886 kb on - strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.936 kb on + strand, within MPMX19_03436at 828.937 kb on - strand, within MPMX19_03436at 828.937 kb on - strand, within MPMX19_03436at 828.937 kb on - strand, within MPMX19_03436at 828.937 kb on - strand, within MPMX19_03436at 828.937 kb on - strand, within MPMX19_03436at 829.242 kb on + strand, within MPMX19_03436at 829.242 kb on + strand, within MPMX19_03436at 829.257 kb on + strand, within MPMX19_03436at 829.257 kb on + strand, within MPMX19_03436at 829.257 kb on + strand, within MPMX19_03436at 829.257 kb on + strand, within MPMX19_03436at 829.258 kb on - strand, within MPMX19_03436at 829.258 kb on - strand, within MPMX19_03436at 829.258 kb on - strand, within MPMX19_03436at 829.258 kb on - strand, within MPMX19_03436at 829.258 kb on - strand, within MPMX19_03436

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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826,811 + MPMX19_03434 0.60 -1.0
826,811 + MPMX19_03434 0.60 -0.9
826,811 + MPMX19_03434 0.60 -0.4
826,811 + MPMX19_03434 0.60 -0.5
826,811 + MPMX19_03434 0.60 -1.0
826,812 - MPMX19_03434 0.60 -0.6
826,812 - MPMX19_03434 0.60 -0.8
826,812 - MPMX19_03434 0.60 -0.7
826,812 - MPMX19_03434 0.60 -1.0
826,812 - MPMX19_03434 0.60 +0.0
826,812 - MPMX19_03434 0.60 -0.6
826,812 - MPMX19_03434 0.60 -1.0
826,812 - MPMX19_03434 0.60 -0.1
826,886 + MPMX19_03434 0.65 -0.5
826,887 - MPMX19_03434 0.65 -1.7
826,914 - MPMX19_03434 0.67 -1.0
827,256 - -0.4
827,256 - +1.1
827,256 - -0.8
827,724 + MPMX19_03435 0.40 -1.8
827,724 + MPMX19_03435 0.40 -1.4
827,724 + MPMX19_03435 0.40 -1.1
827,725 - MPMX19_03435 0.40 -0.8
827,725 - MPMX19_03435 0.40 -0.1
827,725 - MPMX19_03435 0.40 +0.0
827,913 + MPMX19_03435 0.61 +0.4
827,914 - MPMX19_03435 0.61 -1.4
827,914 - MPMX19_03435 0.61 -1.0
828,079 - MPMX19_03435 0.79 +0.2
828,079 - MPMX19_03435 0.79 -2.7
828,079 - MPMX19_03435 0.79 -0.3
828,284 + -0.4
828,284 + +0.4
828,285 - -0.3
828,285 - -0.8
828,285 - -0.7
828,285 - -0.7
828,285 - +1.0
828,585 + -2.2
828,585 + -0.1
828,585 + -0.8
828,585 + -0.3
828,585 + -0.7
828,585 + +0.3
828,585 + -0.1
828,585 + -1.0
828,585 + -0.9
828,586 - -1.3
828,586 - +0.4
828,586 - -0.3
828,586 - +0.0
828,586 - +0.0
828,586 - +0.3
828,586 - +0.2
828,586 - -1.0
828,586 - -0.1
828,600 + -1.0
828,714 + MPMX19_03436 0.10 -1.4
828,714 + MPMX19_03436 0.10 -0.8
828,715 - MPMX19_03436 0.10 +0.2
828,716 - MPMX19_03436 0.10 -1.4
828,885 + MPMX19_03436 0.14 -1.1
828,885 + MPMX19_03436 0.14 -0.2
828,885 + MPMX19_03436 0.14 -0.2
828,886 - MPMX19_03436 0.14 -0.9
828,936 + MPMX19_03436 0.15 -1.3
828,936 + MPMX19_03436 0.15 +0.0
828,936 + MPMX19_03436 0.15 +0.1
828,936 + MPMX19_03436 0.15 -0.2
828,936 + MPMX19_03436 0.15 -1.2
828,936 + MPMX19_03436 0.15 -0.3
828,936 + MPMX19_03436 0.15 -0.4
828,936 + MPMX19_03436 0.15 -1.0
828,937 - MPMX19_03436 0.15 -0.6
828,937 - MPMX19_03436 0.15 -1.2
828,937 - MPMX19_03436 0.15 +0.2
828,937 - MPMX19_03436 0.15 +0.6
828,937 - MPMX19_03436 0.15 -0.7
829,242 + MPMX19_03436 0.23 -0.7
829,242 + MPMX19_03436 0.23 -0.4
829,257 + MPMX19_03436 0.23 +0.3
829,257 + MPMX19_03436 0.23 -0.1
829,257 + MPMX19_03436 0.23 -1.6
829,257 + MPMX19_03436 0.23 -1.0
829,258 - MPMX19_03436 0.23 -1.6
829,258 - MPMX19_03436 0.23 +0.6
829,258 - MPMX19_03436 0.23 -0.1
829,258 - MPMX19_03436 0.23 -0.5
829,258 - MPMX19_03436 0.23 +0.6

Or see this region's nucleotide sequence