Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03419 and MPMX19_03420 are separated by 1 nucleotides MPMX19_03420 and MPMX19_03421 are separated by 142 nucleotides MPMX19_03421 and MPMX19_03422 are separated by 47 nucleotides
MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534
_03419
MPMX19_03420: MPMX19_03420 - hypothetical protein, at 812,536 to 813,021
_03420
MPMX19_03421: MPMX19_03421 - hypothetical protein, at 813,164 to 813,673
_03421
MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190
_03422
Position (kb)
813
814 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 812.453 kb on - strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.488 kb on + strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.489 kb on - strand at 812.506 kb on + strand at 812.506 kb on + strand at 812.506 kb on + strand at 812.507 kb on - strand at 812.507 kb on - strand at 812.807 kb on + strand, within MPMX19_03420 at 812.807 kb on + strand, within MPMX19_03420 at 812.807 kb on + strand, within MPMX19_03420 at 812.808 kb on - strand, within MPMX19_03420 at 812.808 kb on - strand, within MPMX19_03420 at 813.243 kb on + strand, within MPMX19_03421 at 813.243 kb on + strand, within MPMX19_03421 at 813.244 kb on - strand, within MPMX19_03421 at 813.244 kb on - strand, within MPMX19_03421 at 813.252 kb on + strand, within MPMX19_03421 at 813.252 kb on + strand, within MPMX19_03421 at 813.253 kb on - strand, within MPMX19_03421 at 813.253 kb on - strand, within MPMX19_03421 at 813.687 kb on + strand at 813.815 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.842 kb on + strand at 813.843 kb on - strand at 813.843 kb on - strand at 813.843 kb on - strand at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.917 kb on + strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.918 kb on - strand, within MPMX19_03422 at 813.941 kb on + strand, within MPMX19_03422 at 813.942 kb on - strand, within MPMX19_03422 at 813.942 kb on - strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.004 kb on + strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422 at 814.005 kb on - strand, within MPMX19_03422 at 814.034 kb on + strand, within MPMX19_03422 at 814.034 kb on + strand, within MPMX19_03422 at 814.034 kb on + strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.035 kb on - strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.085 kb on + strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.086 kb on - strand, within MPMX19_03422 at 814.130 kb on + strand, within MPMX19_03422 at 814.130 kb on + strand, within MPMX19_03422 at 814.130 kb on + strand, within MPMX19_03422 at 814.131 kb on - strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.322 kb on + strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.323 kb on - strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.382 kb on + strand, within MPMX19_03422 at 814.383 kb on - strand, within MPMX19_03422 at 814.383 kb on - strand, within MPMX19_03422 at 814.383 kb on - strand, within MPMX19_03422 at 814.383 kb on - strand, within MPMX19_03422 at 814.454 kb on + strand, within MPMX19_03422 at 814.455 kb on - strand, within MPMX19_03422 at 814.496 kb on + strand, within MPMX19_03422 at 814.497 kb on - strand, within MPMX19_03422 at 814.497 kb on - strand, within MPMX19_03422 at 814.497 kb on - strand, within MPMX19_03422
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 812,453 - -0.3 812,488 + -2.5 812,488 + -0.1 812,488 + +1.2 812,488 + -0.1 812,488 + +0.6 812,488 + +0.4 812,489 - +0.0 812,489 - -0.1 812,489 - -0.3 812,489 - -0.8 812,489 - -0.4 812,489 - -0.7 812,489 - -2.4 812,489 - +0.2 812,506 + -0.6 812,506 + -0.1 812,506 + +0.6 812,507 - -0.8 812,507 - -0.4 812,807 + MPMX19_03420 0.56 -0.7 812,807 + MPMX19_03420 0.56 +0.0 812,807 + MPMX19_03420 0.56 -0.1 812,808 - MPMX19_03420 0.56 +0.9 812,808 - MPMX19_03420 0.56 +0.0 813,243 + MPMX19_03421 0.15 -1.5 813,243 + MPMX19_03421 0.15 -1.0 813,244 - MPMX19_03421 0.16 +0.5 813,244 - MPMX19_03421 0.16 +0.2 813,252 + MPMX19_03421 0.17 -0.7 813,252 + MPMX19_03421 0.17 +1.1 813,253 - MPMX19_03421 0.17 +0.3 813,253 - MPMX19_03421 0.17 +0.2 813,687 + -0.7 813,815 + +0.8 813,842 + +0.2 813,842 + +0.9 813,842 + -0.9 813,842 + -1.1 813,843 - -0.7 813,843 - +0.4 813,843 - -0.9 813,917 + MPMX19_03422 0.13 -0.8 813,917 + MPMX19_03422 0.13 +0.0 813,917 + MPMX19_03422 0.13 -0.4 813,917 + MPMX19_03422 0.13 +0.2 813,917 + MPMX19_03422 0.13 +1.3 813,917 + MPMX19_03422 0.13 -0.6 813,917 + MPMX19_03422 0.13 +0.1 813,917 + MPMX19_03422 0.13 +0.6 813,917 + MPMX19_03422 0.13 -0.1 813,917 + MPMX19_03422 0.13 -1.0 813,917 + MPMX19_03422 0.13 -1.6 813,917 + MPMX19_03422 0.13 -1.1 813,917 + MPMX19_03422 0.13 -0.4 813,918 - MPMX19_03422 0.13 -0.8 813,918 - MPMX19_03422 0.13 -0.8 813,918 - MPMX19_03422 0.13 -0.9 813,918 - MPMX19_03422 0.13 +0.8 813,918 - MPMX19_03422 0.13 +0.4 813,918 - MPMX19_03422 0.13 -0.2 813,918 - MPMX19_03422 0.13 -0.9 813,918 - MPMX19_03422 0.13 +0.8 813,918 - MPMX19_03422 0.13 +0.1 813,918 - MPMX19_03422 0.13 +1.6 813,918 - MPMX19_03422 0.13 -0.2 813,918 - MPMX19_03422 0.13 -1.7 813,941 + MPMX19_03422 0.15 +0.4 813,942 - MPMX19_03422 0.15 +0.5 813,942 - MPMX19_03422 0.15 -0.4 814,004 + MPMX19_03422 0.19 -0.7 814,004 + MPMX19_03422 0.19 -0.9 814,004 + MPMX19_03422 0.19 -0.2 814,005 - MPMX19_03422 0.19 +0.2 814,005 - MPMX19_03422 0.19 +0.2 814,005 - MPMX19_03422 0.19 +0.2 814,034 + MPMX19_03422 0.21 -0.8 814,034 + MPMX19_03422 0.21 -1.8 814,034 + MPMX19_03422 0.21 +0.2 814,035 - MPMX19_03422 0.21 -0.2 814,035 - MPMX19_03422 0.21 -0.5 814,035 - MPMX19_03422 0.21 +0.0 814,035 - MPMX19_03422 0.21 -0.1 814,035 - MPMX19_03422 0.21 -0.6 814,035 - MPMX19_03422 0.21 -0.7 814,085 + MPMX19_03422 0.25 -0.4 814,085 + MPMX19_03422 0.25 -0.5 814,085 + MPMX19_03422 0.25 +0.6 814,085 + MPMX19_03422 0.25 -0.8 814,085 + MPMX19_03422 0.25 -1.2 814,085 + MPMX19_03422 0.25 +0.3 814,085 + MPMX19_03422 0.25 -1.8 814,086 - MPMX19_03422 0.25 +0.8 814,086 - MPMX19_03422 0.25 +0.3 814,086 - MPMX19_03422 0.25 -1.4 814,086 - MPMX19_03422 0.25 +0.0 814,086 - MPMX19_03422 0.25 -0.8 814,086 - MPMX19_03422 0.25 -0.2 814,086 - MPMX19_03422 0.25 -0.8 814,086 - MPMX19_03422 0.25 -3.1 814,086 - MPMX19_03422 0.25 -1.2 814,130 + MPMX19_03422 0.28 -0.5 814,130 + MPMX19_03422 0.28 +1.2 814,130 + MPMX19_03422 0.28 -1.8 814,131 - MPMX19_03422 0.28 +0.6 814,322 + MPMX19_03422 0.41 +0.6 814,322 + MPMX19_03422 0.41 -0.4 814,322 + MPMX19_03422 0.41 -0.1 814,322 + MPMX19_03422 0.41 +0.0 814,322 + MPMX19_03422 0.41 -0.6 814,322 + MPMX19_03422 0.41 +0.2 814,322 + MPMX19_03422 0.41 +0.5 814,322 + MPMX19_03422 0.41 -2.5 814,323 - MPMX19_03422 0.41 -1.6 814,323 - MPMX19_03422 0.41 -1.0 814,323 - MPMX19_03422 0.41 +0.3 814,323 - MPMX19_03422 0.41 +0.2 814,323 - MPMX19_03422 0.41 +1.4 814,323 - MPMX19_03422 0.41 -0.0 814,323 - MPMX19_03422 0.41 +0.0 814,323 - MPMX19_03422 0.41 -0.5 814,382 + MPMX19_03422 0.45 -1.2 814,382 + MPMX19_03422 0.45 +0.3 814,382 + MPMX19_03422 0.45 +0.1 814,382 + MPMX19_03422 0.45 -1.0 814,382 + MPMX19_03422 0.45 +0.0 814,382 + MPMX19_03422 0.45 -0.7 814,382 + MPMX19_03422 0.45 -0.2 814,383 - MPMX19_03422 0.45 +0.3 814,383 - MPMX19_03422 0.45 +0.6 814,383 - MPMX19_03422 0.45 +0.6 814,383 - MPMX19_03422 0.45 -0.6 814,454 + MPMX19_03422 0.50 +0.0 814,455 - MPMX19_03422 0.50 -1.2 814,496 + MPMX19_03422 0.53 +0.4 814,497 - MPMX19_03422 0.53 -2.2 814,497 - MPMX19_03422 0.53 -0.2 814,497 - MPMX19_03422 0.53 -0.1
Or see this region's nucleotide sequence