Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03415

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03413 and MPMX19_03414 are separated by 105 nucleotidesMPMX19_03414 and MPMX19_03415 are separated by 30 nucleotidesMPMX19_03415 and MPMX19_03416 are separated by 10 nucleotides MPMX19_03413: MPMX19_03413 - hypothetical protein, at 802,554 to 803,690 _03413 MPMX19_03414: MPMX19_03414 - hypothetical protein, at 803,796 to 804,185 _03414 MPMX19_03415: MPMX19_03415 - hypothetical protein, at 804,216 to 804,908 _03415 MPMX19_03416: MPMX19_03416 - Actin cross-linking toxin VgrG1, at 804,919 to 807,036 _03416 Position (kb) 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1at 803.316 kb on + strand, within MPMX19_03413at 803.316 kb on + strand, within MPMX19_03413at 803.361 kb on + strand, within MPMX19_03413at 803.501 kb on + strand, within MPMX19_03413at 803.502 kb on - strand, within MPMX19_03413at 803.524 kb on - strand, within MPMX19_03413at 803.553 kb on + strand, within MPMX19_03413at 803.553 kb on + strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.753 kb on - strandat 803.753 kb on - strandat 803.753 kb on - strandat 804.310 kb on + strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.491 kb on - strand, within MPMX19_03415at 804.491 kb on - strand, within MPMX19_03415at 804.549 kb on - strand, within MPMX19_03415at 804.549 kb on - strand, within MPMX19_03415at 804.565 kb on + strand, within MPMX19_03415at 804.565 kb on + strand, within MPMX19_03415at 804.566 kb on - strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.668 kb on - strand, within MPMX19_03415at 804.703 kb on + strand, within MPMX19_03415at 804.703 kb on + strand, within MPMX19_03415at 804.703 kb on + strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.704 kb on - strand, within MPMX19_03415at 804.775 kb on + strand, within MPMX19_03415at 804.776 kb on - strand, within MPMX19_03415at 805.310 kb on + strand, within MPMX19_03416at 805.310 kb on + strand, within MPMX19_03416at 805.310 kb on + strand, within MPMX19_03416at 805.310 kb on + strand, within MPMX19_03416at 805.310 kb on + strand, within MPMX19_03416at 805.310 kb on + strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.311 kb on - strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.434 kb on + strand, within MPMX19_03416at 805.435 kb on - strand, within MPMX19_03416at 805.435 kb on - strand, within MPMX19_03416at 805.435 kb on - strand, within MPMX19_03416at 805.485 kb on + strand, within MPMX19_03416at 805.486 kb on - strand, within MPMX19_03416at 805.692 kb on - strand, within MPMX19_03416at 805.715 kb on + strand, within MPMX19_03416at 805.715 kb on + strand, within MPMX19_03416at 805.715 kb on + strand, within MPMX19_03416at 805.715 kb on + strand, within MPMX19_03416at 805.715 kb on + strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.716 kb on - strand, within MPMX19_03416at 805.808 kb on + strand, within MPMX19_03416at 805.808 kb on + strand, within MPMX19_03416at 805.809 kb on - strand, within MPMX19_03416

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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803,316 + MPMX19_03413 0.67 -0.1
803,316 + MPMX19_03413 0.67 -1.0
803,361 + MPMX19_03413 0.71 -1.8
803,501 + MPMX19_03413 0.83 +0.3
803,502 - MPMX19_03413 0.83 -0.1
803,524 - MPMX19_03413 0.85 -0.3
803,553 + MPMX19_03413 0.88 -0.8
803,553 + MPMX19_03413 0.88 -1.5
803,554 - MPMX19_03413 0.88 +0.9
803,554 - MPMX19_03413 0.88 -1.3
803,554 - MPMX19_03413 0.88 +1.2
803,753 - +0.2
803,753 - -1.8
803,753 - -0.7
804,310 + MPMX19_03415 0.14 -0.9
804,311 - MPMX19_03415 0.14 +0.3
804,311 - MPMX19_03415 0.14 +0.0
804,311 - MPMX19_03415 0.14 -1.6
804,311 - MPMX19_03415 0.14 -1.4
804,311 - MPMX19_03415 0.14 +0.9
804,454 + MPMX19_03415 0.34 -0.5
804,454 + MPMX19_03415 0.34 -1.5
804,454 + MPMX19_03415 0.34 -1.8
804,454 + MPMX19_03415 0.34 -0.6
804,454 + MPMX19_03415 0.34 -0.4
804,454 + MPMX19_03415 0.34 -2.6
804,455 - MPMX19_03415 0.34 -0.7
804,455 - MPMX19_03415 0.34 -0.3
804,455 - MPMX19_03415 0.34 -1.2
804,455 - MPMX19_03415 0.34 -0.3
804,455 - MPMX19_03415 0.34 +0.0
804,455 - MPMX19_03415 0.34 -0.5
804,490 + MPMX19_03415 0.40 +0.5
804,490 + MPMX19_03415 0.40 +0.2
804,490 + MPMX19_03415 0.40 -0.2
804,490 + MPMX19_03415 0.40 +0.2
804,490 + MPMX19_03415 0.40 -1.4
804,491 - MPMX19_03415 0.40 +0.2
804,491 - MPMX19_03415 0.40 -1.4
804,549 - MPMX19_03415 0.48 -1.3
804,549 - MPMX19_03415 0.48 -0.6
804,565 + MPMX19_03415 0.50 +0.3
804,565 + MPMX19_03415 0.50 -1.9
804,566 - MPMX19_03415 0.51 -1.0
804,598 + MPMX19_03415 0.55 +0.7
804,598 + MPMX19_03415 0.55 +0.7
804,598 + MPMX19_03415 0.55 -1.6
804,598 + MPMX19_03415 0.55 -0.6
804,598 + MPMX19_03415 0.55 -1.1
804,598 + MPMX19_03415 0.55 +1.0
804,599 - MPMX19_03415 0.55 -1.3
804,599 - MPMX19_03415 0.55 +0.3
804,599 - MPMX19_03415 0.55 -1.0
804,599 - MPMX19_03415 0.55 -0.6
804,599 - MPMX19_03415 0.55 +1.6
804,631 + MPMX19_03415 0.60 -0.8
804,631 + MPMX19_03415 0.60 -1.4
804,631 + MPMX19_03415 0.60 -2.5
804,631 + MPMX19_03415 0.60 -0.7
804,631 + MPMX19_03415 0.60 -1.7
804,632 - MPMX19_03415 0.60 -0.5
804,632 - MPMX19_03415 0.60 -1.6
804,632 - MPMX19_03415 0.60 +0.0
804,632 - MPMX19_03415 0.60 -0.7
804,632 - MPMX19_03415 0.60 +0.2
804,632 - MPMX19_03415 0.60 +0.2
804,632 - MPMX19_03415 0.60 -1.2
804,632 - MPMX19_03415 0.60 -0.6
804,632 - MPMX19_03415 0.60 -0.3
804,632 - MPMX19_03415 0.60 -0.7
804,632 - MPMX19_03415 0.60 +0.2
804,632 - MPMX19_03415 0.60 -0.7
804,632 - MPMX19_03415 0.60 -0.3
804,632 - MPMX19_03415 0.60 +1.2
804,632 - MPMX19_03415 0.60 -1.0
804,632 - MPMX19_03415 0.60 -2.9
804,667 + MPMX19_03415 0.65 -1.4
804,667 + MPMX19_03415 0.65 +1.6
804,667 + MPMX19_03415 0.65 +0.4
804,668 - MPMX19_03415 0.65 -2.3
804,703 + MPMX19_03415 0.70 +0.8
804,703 + MPMX19_03415 0.70 +0.3
804,703 + MPMX19_03415 0.70 +0.0
804,704 - MPMX19_03415 0.70 +0.2
804,704 - MPMX19_03415 0.70 -0.3
804,704 - MPMX19_03415 0.70 +0.0
804,704 - MPMX19_03415 0.70 +0.0
804,704 - MPMX19_03415 0.70 +1.0
804,704 - MPMX19_03415 0.70 -1.0
804,704 - MPMX19_03415 0.70 -1.4
804,775 + MPMX19_03415 0.81 -1.0
804,776 - MPMX19_03415 0.81 -0.2
805,310 + MPMX19_03416 0.18 -0.8
805,310 + MPMX19_03416 0.18 -2.2
805,310 + MPMX19_03416 0.18 -0.4
805,310 + MPMX19_03416 0.18 +1.0
805,310 + MPMX19_03416 0.18 +0.4
805,310 + MPMX19_03416 0.18 -1.7
805,311 - MPMX19_03416 0.19 -0.6
805,311 - MPMX19_03416 0.19 -0.9
805,311 - MPMX19_03416 0.19 +0.0
805,311 - MPMX19_03416 0.19 +1.4
805,311 - MPMX19_03416 0.19 -1.6
805,311 - MPMX19_03416 0.19 -0.7
805,311 - MPMX19_03416 0.19 +0.9
805,311 - MPMX19_03416 0.19 -0.5
805,311 - MPMX19_03416 0.19 -1.4
805,311 - MPMX19_03416 0.19 -2.0
805,434 + MPMX19_03416 0.24 -1.2
805,434 + MPMX19_03416 0.24 -0.1
805,434 + MPMX19_03416 0.24 -3.0
805,434 + MPMX19_03416 0.24 +1.3
805,434 + MPMX19_03416 0.24 -0.6
805,434 + MPMX19_03416 0.24 +0.6
805,434 + MPMX19_03416 0.24 -0.3
805,434 + MPMX19_03416 0.24 -0.7
805,434 + MPMX19_03416 0.24 -0.2
805,434 + MPMX19_03416 0.24 -2.3
805,434 + MPMX19_03416 0.24 -0.4
805,434 + MPMX19_03416 0.24 -0.7
805,435 - MPMX19_03416 0.24 -2.0
805,435 - MPMX19_03416 0.24 -1.1
805,435 - MPMX19_03416 0.24 +0.5
805,485 + MPMX19_03416 0.27 +1.2
805,486 - MPMX19_03416 0.27 +0.8
805,692 - MPMX19_03416 0.36 -1.0
805,715 + MPMX19_03416 0.38 +0.8
805,715 + MPMX19_03416 0.38 -0.2
805,715 + MPMX19_03416 0.38 -1.0
805,715 + MPMX19_03416 0.38 -2.2
805,715 + MPMX19_03416 0.38 +0.8
805,716 - MPMX19_03416 0.38 -1.4
805,716 - MPMX19_03416 0.38 +0.6
805,716 - MPMX19_03416 0.38 -2.0
805,716 - MPMX19_03416 0.38 -0.7
805,716 - MPMX19_03416 0.38 -1.4
805,716 - MPMX19_03416 0.38 +1.6
805,716 - MPMX19_03416 0.38 +0.4
805,716 - MPMX19_03416 0.38 -0.4
805,808 + MPMX19_03416 0.42 -0.7
805,808 + MPMX19_03416 0.42 +1.3
805,809 - MPMX19_03416 0.42 -1.8

Or see this region's nucleotide sequence