Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03406

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03405 and MPMX19_03406 are separated by 173 nucleotidesMPMX19_03406 and MPMX19_03407 are separated by 549 nucleotides MPMX19_03405: MPMX19_03405 - hypothetical protein, at 792,891 to 794,300 _03405 MPMX19_03406: MPMX19_03406 - HTH-type transcriptional regulator HdfR, at 794,474 to 795,430 _03406 MPMX19_03407: MPMX19_03407 - 16S ribosomal RNA, at 795,980 to 797,461 _03407 Position (kb) 794 795 796Strain fitness (log2 ratio) -2 -1 0 1 2 3at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.423 kb on - strandat 794.423 kb on - strandat 794.423 kb on - strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 795.121 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.374 kb on + strandat 795.374 kb on + strandat 795.374 kb on + strandat 795.374 kb on + strandat 795.375 kb on - strandat 795.375 kb on - strandat 795.375 kb on - strandat 795.375 kb on - strandat 795.375 kb on - strandat 795.375 kb on - strandat 795.559 kb on - strandat 795.559 kb on - strandat 795.559 kb on - strandat 795.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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793,834 + MPMX19_03405 0.67 -0.2
793,834 + MPMX19_03405 0.67 -0.8
793,834 + MPMX19_03405 0.67 +1.0
793,834 + MPMX19_03405 0.67 -0.4
793,834 + MPMX19_03405 0.67 -2.2
793,834 + MPMX19_03405 0.67 +1.3
793,834 + MPMX19_03405 0.67 +0.4
793,834 + MPMX19_03405 0.67 -1.8
793,834 + MPMX19_03405 0.67 -2.5
793,834 + MPMX19_03405 0.67 +0.0
793,835 - MPMX19_03405 0.67 -0.6
793,835 - MPMX19_03405 0.67 +0.4
793,835 - MPMX19_03405 0.67 -1.2
793,867 + MPMX19_03405 0.69 -1.0
793,867 + MPMX19_03405 0.69 -0.9
793,867 + MPMX19_03405 0.69 -1.3
793,867 + MPMX19_03405 0.69 +0.8
793,867 + MPMX19_03405 0.69 -0.5
793,867 + MPMX19_03405 0.69 +0.0
793,868 - MPMX19_03405 0.69 +0.0
793,868 - MPMX19_03405 0.69 -2.0
793,868 - MPMX19_03405 0.69 -1.5
793,868 - MPMX19_03405 0.69 -1.2
793,868 - MPMX19_03405 0.69 +1.2
793,987 + MPMX19_03405 0.78 -0.8
793,987 + MPMX19_03405 0.78 -0.4
793,987 + MPMX19_03405 0.78 -0.8
793,987 + MPMX19_03405 0.78 -0.1
793,987 + MPMX19_03405 0.78 +1.1
793,987 + MPMX19_03405 0.78 -1.4
793,987 + MPMX19_03405 0.78 -0.3
793,987 + MPMX19_03405 0.78 -0.2
793,987 + MPMX19_03405 0.78 -0.4
793,987 + MPMX19_03405 0.78 -1.1
793,987 + MPMX19_03405 0.78 -0.6
793,987 + MPMX19_03405 0.78 -1.2
793,987 + MPMX19_03405 0.78 +0.2
793,988 - MPMX19_03405 0.78 +1.3
793,988 - MPMX19_03405 0.78 +0.9
793,988 - MPMX19_03405 0.78 +0.0
793,988 - MPMX19_03405 0.78 -2.0
793,988 - MPMX19_03405 0.78 +1.4
793,988 - MPMX19_03405 0.78 -1.9
793,988 - MPMX19_03405 0.78 +0.3
794,095 + MPMX19_03405 0.85 -0.3
794,095 + MPMX19_03405 0.85 -0.7
794,095 + MPMX19_03405 0.85 -1.1
794,095 + MPMX19_03405 0.85 -0.5
794,096 - MPMX19_03405 0.85 -0.5
794,096 - MPMX19_03405 0.85 +1.0
794,096 - MPMX19_03405 0.85 -1.4
794,096 - MPMX19_03405 0.85 -1.6
794,096 - MPMX19_03405 0.85 -1.1
794,422 + +0.3
794,422 + -0.4
794,422 + -0.2
794,422 + -0.6
794,422 + +0.2
794,422 + +0.6
794,422 + -0.8
794,422 + -0.7
794,422 + -1.0
794,422 + +0.3
794,422 + -1.0
794,422 + -1.1
794,422 + -2.3
794,423 - +0.3
794,423 - -0.1
794,423 - -0.7
794,427 + +1.0
794,427 + -1.6
794,427 + -0.9
794,427 + -0.2
794,427 + +0.0
794,427 + -1.2
794,427 + -1.2
794,427 + -1.0
794,427 + -1.5
794,427 + -0.8
794,427 + +0.0
794,427 + -1.8
794,427 + -0.4
794,427 + +0.6
794,427 + +0.4
794,427 + +1.2
794,427 + -0.9
794,427 + -0.3
794,427 + -1.0
794,427 + +1.0
794,427 + +1.5
794,428 - -1.1
794,428 - -0.7
794,428 - -0.2
794,428 - +3.2
794,428 - -1.0
794,428 - -1.0
794,428 - -1.0
794,428 - -0.8
794,428 - +0.0
794,428 - -0.3
794,428 - -2.1
794,428 - -0.5
794,428 - -1.4
794,428 - -2.0
794,428 - -2.3
794,428 - -1.0
794,428 - +0.3
795,121 + MPMX19_03406 0.68 -0.3
795,247 + MPMX19_03406 0.81 -0.8
795,247 + MPMX19_03406 0.81 -1.0
795,247 + MPMX19_03406 0.81 -1.7
795,247 + MPMX19_03406 0.81 -0.9
795,247 + MPMX19_03406 0.81 -0.7
795,247 + MPMX19_03406 0.81 -1.0
795,248 - MPMX19_03406 0.81 +0.6
795,248 - MPMX19_03406 0.81 -1.0
795,248 - MPMX19_03406 0.81 -1.4
795,248 - MPMX19_03406 0.81 -1.0
795,248 - MPMX19_03406 0.81 +0.2
795,374 + +0.6
795,374 + -2.3
795,374 + -1.0
795,374 + +0.9
795,375 - -1.0
795,375 - +0.3
795,375 - -1.0
795,375 - -0.1
795,375 - +0.0
795,375 - -0.6
795,559 - -0.9
795,559 - +0.0
795,559 - -0.4
795,561 - +0.6

Or see this region's nucleotide sequence