Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03394 and MPMX19_03395 overlap by 4 nucleotides MPMX19_03395 and MPMX19_03396 are separated by 5 nucleotides MPMX19_03396 and MPMX19_03397 are separated by 33 nucleotides
MPMX19_03394: MPMX19_03394 - hypothetical protein, at 780,303 to 781,343
_03394
MPMX19_03395: MPMX19_03395 - Lipopolysaccharide export system ATP-binding protein LptB, at 781,340 to 782,113
_03395
MPMX19_03396: MPMX19_03396 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 782,119 to 782,826
_03396
MPMX19_03397: MPMX19_03397 - Acetylornithine deacetylase, at 782,860 to 784,023
_03397
Position (kb) 782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 782.096 kb on + strand at 782.096 kb on + strand at 782.097 kb on - strand at 782.149 kb on + strand at 782.150 kb on - strand at 782.652 kb on + strand, within MPMX19_03396 at 782.652 kb on + strand, within MPMX19_03396 at 782.652 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.737 kb on + strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 782.738 kb on - strand, within MPMX19_03396 at 783.111 kb on - strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.332 kb on + strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.333 kb on - strand, within MPMX19_03397 at 783.614 kb on + strand, within MPMX19_03397 at 783.614 kb on + strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397 at 783.615 kb on - strand, within MPMX19_03397
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 782,096 + +1.0 782,096 + +0.8 782,097 - +2.3 782,149 + +0.2 782,150 - -0.8 782,652 + MPMX19_03396 0.75 -0.4 782,652 + MPMX19_03396 0.75 -0.9 782,652 + MPMX19_03396 0.75 +0.2 782,737 + MPMX19_03396 0.87 +0.5 782,737 + MPMX19_03396 0.87 -2.0 782,737 + MPMX19_03396 0.87 +2.6 782,738 - MPMX19_03396 0.87 -0.3 782,738 - MPMX19_03396 0.87 +0.5 782,738 - MPMX19_03396 0.87 -0.1 782,738 - MPMX19_03396 0.87 +0.6 782,738 - MPMX19_03396 0.87 +0.0 783,111 - MPMX19_03397 0.22 +0.3 783,332 + MPMX19_03397 0.41 +0.2 783,332 + MPMX19_03397 0.41 -2.1 783,332 + MPMX19_03397 0.41 -0.4 783,332 + MPMX19_03397 0.41 -0.3 783,332 + MPMX19_03397 0.41 +0.3 783,332 + MPMX19_03397 0.41 -0.6 783,332 + MPMX19_03397 0.41 -1.0 783,333 - MPMX19_03397 0.41 -0.7 783,333 - MPMX19_03397 0.41 -1.4 783,333 - MPMX19_03397 0.41 -0.2 783,333 - MPMX19_03397 0.41 -0.9 783,333 - MPMX19_03397 0.41 +0.6 783,333 - MPMX19_03397 0.41 -0.6 783,333 - MPMX19_03397 0.41 -2.4 783,333 - MPMX19_03397 0.41 +0.1 783,614 + MPMX19_03397 0.65 +0.2 783,614 + MPMX19_03397 0.65 +1.1 783,615 - MPMX19_03397 0.65 +0.0 783,615 - MPMX19_03397 0.65 -1.4 783,615 - MPMX19_03397 0.65 -0.4 783,615 - MPMX19_03397 0.65 +0.6 783,615 - MPMX19_03397 0.65 +0.9 783,615 - MPMX19_03397 0.65 -1.2 783,615 - MPMX19_03397 0.65 -1.2
Or see this region's nucleotide sequence