Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03367

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03364 and MPMX19_03365 are separated by 7 nucleotidesMPMX19_03365 and MPMX19_03366 are separated by 8 nucleotidesMPMX19_03366 and MPMX19_03367 are separated by 34 nucleotidesMPMX19_03367 and MPMX19_03368 are separated by 390 nucleotides MPMX19_03364: MPMX19_03364 - Vitamin B12 import ATP-binding protein BtuD, at 738,347 to 740,098 _03364 MPMX19_03365: MPMX19_03365 - hypothetical protein, at 740,106 to 740,864 _03365 MPMX19_03366: MPMX19_03366 - hypothetical protein, at 740,873 to 741,043 _03366 MPMX19_03367: MPMX19_03367 - Magnetosome membrane protein 22, at 741,078 to 741,581 _03367 MPMX19_03368: MPMX19_03368 - hypothetical protein, at 741,972 to 745,289 _03368 Position (kb) 741 742Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 740.221 kb on + strand, within MPMX19_03365at 740.221 kb on + strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.222 kb on - strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.293 kb on + strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.294 kb on - strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.392 kb on + strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.393 kb on - strand, within MPMX19_03365at 740.419 kb on + strand, within MPMX19_03365at 740.419 kb on + strand, within MPMX19_03365at 740.420 kb on - strand, within MPMX19_03365at 740.420 kb on - strand, within MPMX19_03365at 740.450 kb on - strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.545 kb on + strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.546 kb on - strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.725 kb on + strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.726 kb on - strand, within MPMX19_03365at 740.731 kb on + strand, within MPMX19_03365at 740.731 kb on + strand, within MPMX19_03365at 740.732 kb on - strand, within MPMX19_03365at 740.732 kb on - strand, within MPMX19_03365at 740.767 kb on + strand, within MPMX19_03365at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.964 kb on + strand, within MPMX19_03366at 740.965 kb on - strand, within MPMX19_03366at 740.965 kb on - strand, within MPMX19_03366at 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.027 kb on + strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.028 kb on - strandat 741.178 kb on + strand, within MPMX19_03367at 741.179 kb on - strand, within MPMX19_03367at 741.433 kb on + strand, within MPMX19_03367at 741.433 kb on + strand, within MPMX19_03367at 741.433 kb on + strand, within MPMX19_03367at 741.434 kb on - strand, within MPMX19_03367at 741.434 kb on - strand, within MPMX19_03367at 741.434 kb on - strand, within MPMX19_03367at 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.532 kb on + strandat 741.533 kb on - strandat 741.533 kb on - strandat 741.533 kb on - strandat 741.533 kb on - strandat 741.533 kb on - strandat 741.533 kb on - strandat 741.541 kb on + strandat 741.541 kb on + strandat 741.541 kb on + strandat 741.541 kb on + strandat 741.541 kb on + strandat 741.542 kb on - strandat 741.542 kb on - strandat 741.542 kb on - strandat 741.570 kb on - strandat 741.577 kb on - strandat 741.577 kb on - strandat 741.577 kb on - strandat 741.577 kb on - strandat 741.577 kb on - strandat 741.577 kb on - strandat 741.763 kb on - strandat 741.773 kb on - strandat 741.773 kb on - strandat 741.783 kb on - strandat 741.790 kb on - strandat 741.805 kb on + strandat 741.805 kb on + strandat 741.822 kb on - strandat 741.822 kb on - strandat 741.887 kb on + strandat 741.924 kb on + strandat 741.944 kb on + strandat 741.973 kb on + strandat 741.973 kb on + strandat 741.974 kb on - strandat 742.068 kb on - strandat 742.068 kb on - strandat 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.417 kb on + strand, within MPMX19_03368at 742.418 kb on - strand, within MPMX19_03368at 742.418 kb on - strand, within MPMX19_03368at 742.418 kb on - strand, within MPMX19_03368at 742.418 kb on - strand, within MPMX19_03368at 742.418 kb on - strand, within MPMX19_03368at 742.500 kb on - strand, within MPMX19_03368at 742.500 kb on - strand, within MPMX19_03368at 742.558 kb on + strand, within MPMX19_03368at 742.558 kb on + strand, within MPMX19_03368at 742.559 kb on - strand, within MPMX19_03368at 742.559 kb on - strand, within MPMX19_03368

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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740,221 + MPMX19_03365 0.15 -0.3
740,221 + MPMX19_03365 0.15 -0.2
740,222 - MPMX19_03365 0.15 -1.1
740,222 - MPMX19_03365 0.15 +0.0
740,222 - MPMX19_03365 0.15 +0.5
740,293 + MPMX19_03365 0.25 +0.6
740,293 + MPMX19_03365 0.25 -0.8
740,293 + MPMX19_03365 0.25 +0.6
740,293 + MPMX19_03365 0.25 +0.4
740,293 + MPMX19_03365 0.25 +0.0
740,293 + MPMX19_03365 0.25 +0.8
740,294 - MPMX19_03365 0.25 -0.4
740,294 - MPMX19_03365 0.25 -0.6
740,294 - MPMX19_03365 0.25 -0.0
740,294 - MPMX19_03365 0.25 +0.3
740,294 - MPMX19_03365 0.25 -0.3
740,294 - MPMX19_03365 0.25 +0.3
740,294 - MPMX19_03365 0.25 +0.4
740,294 - MPMX19_03365 0.25 -0.9
740,294 - MPMX19_03365 0.25 -1.1
740,392 + MPMX19_03365 0.38 +0.6
740,392 + MPMX19_03365 0.38 -1.7
740,392 + MPMX19_03365 0.38 +0.0
740,393 - MPMX19_03365 0.38 +0.7
740,393 - MPMX19_03365 0.38 +1.4
740,393 - MPMX19_03365 0.38 +0.4
740,393 - MPMX19_03365 0.38 +0.3
740,419 + MPMX19_03365 0.41 -0.0
740,419 + MPMX19_03365 0.41 +1.4
740,420 - MPMX19_03365 0.41 -1.1
740,420 - MPMX19_03365 0.41 -1.3
740,450 - MPMX19_03365 0.45 +0.5
740,545 + MPMX19_03365 0.58 +1.0
740,545 + MPMX19_03365 0.58 -0.4
740,545 + MPMX19_03365 0.58 -0.6
740,545 + MPMX19_03365 0.58 +0.3
740,545 + MPMX19_03365 0.58 -1.6
740,546 - MPMX19_03365 0.58 -0.1
740,546 - MPMX19_03365 0.58 +0.3
740,546 - MPMX19_03365 0.58 -1.8
740,546 - MPMX19_03365 0.58 -0.4
740,725 + MPMX19_03365 0.82 -0.8
740,725 + MPMX19_03365 0.82 -2.4
740,725 + MPMX19_03365 0.82 +0.0
740,725 + MPMX19_03365 0.82 -0.4
740,725 + MPMX19_03365 0.82 -0.2
740,725 + MPMX19_03365 0.82 -0.1
740,725 + MPMX19_03365 0.82 +0.6
740,725 + MPMX19_03365 0.82 +0.0
740,725 + MPMX19_03365 0.82 -1.6
740,725 + MPMX19_03365 0.82 +1.6
740,726 - MPMX19_03365 0.82 -0.6
740,726 - MPMX19_03365 0.82 +0.0
740,726 - MPMX19_03365 0.82 -1.2
740,731 + MPMX19_03365 0.82 +0.9
740,731 + MPMX19_03365 0.82 -0.0
740,732 - MPMX19_03365 0.82 +0.1
740,732 - MPMX19_03365 0.82 -0.8
740,767 + MPMX19_03365 0.87 -0.7
740,964 + MPMX19_03366 0.53 -0.0
740,964 + MPMX19_03366 0.53 -0.7
740,964 + MPMX19_03366 0.53 -0.4
740,964 + MPMX19_03366 0.53 -0.8
740,965 - MPMX19_03366 0.54 -1.0
740,965 - MPMX19_03366 0.54 -0.7
741,027 + -1.2
741,027 + -0.3
741,027 + -0.6
741,027 + -0.9
741,027 + -1.1
741,027 + -1.0
741,027 + -1.4
741,027 + +0.1
741,027 + -0.4
741,027 + +0.0
741,027 + +1.4
741,027 + -0.9
741,028 - -0.3
741,028 - -2.1
741,028 - -0.4
741,028 - -1.4
741,028 - -0.2
741,028 - +1.8
741,028 - -0.3
741,028 - -2.0
741,028 - -0.8
741,028 - +0.9
741,028 - -1.2
741,178 + MPMX19_03367 0.20 -0.4
741,179 - MPMX19_03367 0.20 -1.7
741,433 + MPMX19_03367 0.70 -1.4
741,433 + MPMX19_03367 0.70 +0.1
741,433 + MPMX19_03367 0.70 -0.7
741,434 - MPMX19_03367 0.71 -2.1
741,434 - MPMX19_03367 0.71 -0.6
741,434 - MPMX19_03367 0.71 -1.7
741,532 + -0.6
741,532 + +0.0
741,532 + -1.4
741,532 + +0.1
741,532 + -0.6
741,532 + +0.3
741,532 + -0.7
741,532 + -1.4
741,532 + -0.9
741,533 - -2.0
741,533 - +0.8
741,533 - +0.3
741,533 - +1.0
741,533 - +0.2
741,533 - -0.9
741,541 + -1.4
741,541 + -1.0
741,541 + -0.4
741,541 + -1.1
741,541 + -1.2
741,542 - -1.0
741,542 - -0.8
741,542 - +0.3
741,570 - +0.0
741,577 - +0.0
741,577 - +1.3
741,577 - -1.6
741,577 - -1.7
741,577 - +1.6
741,577 - -0.2
741,763 - -0.8
741,773 - -0.2
741,773 - +0.5
741,783 - -1.4
741,790 - -0.7
741,805 + -1.2
741,805 + -0.7
741,822 - +0.1
741,822 - +0.6
741,887 + +0.3
741,924 + -1.8
741,944 + +0.2
741,973 + -2.1
741,973 + +1.3
741,974 - -0.4
742,068 - -2.8
742,068 - -0.4
742,417 + MPMX19_03368 0.13 -1.0
742,417 + MPMX19_03368 0.13 -2.2
742,417 + MPMX19_03368 0.13 -0.0
742,417 + MPMX19_03368 0.13 +0.9
742,417 + MPMX19_03368 0.13 -0.4
742,417 + MPMX19_03368 0.13 +0.6
742,417 + MPMX19_03368 0.13 -0.4
742,418 - MPMX19_03368 0.13 -0.7
742,418 - MPMX19_03368 0.13 +2.9
742,418 - MPMX19_03368 0.13 +0.5
742,418 - MPMX19_03368 0.13 +1.2
742,418 - MPMX19_03368 0.13 -0.8
742,500 - MPMX19_03368 0.16 +1.0
742,500 - MPMX19_03368 0.16 +0.0
742,558 + MPMX19_03368 0.18 -0.1
742,558 + MPMX19_03368 0.18 -1.1
742,559 - MPMX19_03368 0.18 -0.4
742,559 - MPMX19_03368 0.18 +0.0

Or see this region's nucleotide sequence