Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03331

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03330 and MPMX19_03331 are separated by 17 nucleotidesMPMX19_03331 and MPMX19_03332 overlap by 4 nucleotides MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845 _03330 MPMX19_03331: MPMX19_03331 - hypothetical protein, at 683,863 to 684,597 _03331 MPMX19_03332: MPMX19_03332 - hypothetical protein, at 684,594 to 687,026 _03332 Position (kb) 683 684 685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 683.450 kb on + strand, within MPMX19_03330at 683.451 kb on - strand, within MPMX19_03330at 683.451 kb on - strand, within MPMX19_03330at 683.642 kb on + strandat 683.643 kb on - strandat 683.864 kb on + strandat 683.864 kb on + strandat 683.865 kb on - strandat 683.946 kb on + strand, within MPMX19_03331at 684.069 kb on + strand, within MPMX19_03331at 684.069 kb on + strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.180 kb on - strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.458 kb on + strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.459 kb on - strand, within MPMX19_03331at 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.775 kb on + strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.776 kb on - strandat 684.830 kb on - strandat 684.830 kb on - strandat 685.021 kb on + strand, within MPMX19_03332at 685.021 kb on + strand, within MPMX19_03332at 685.022 kb on - strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.039 kb on + strand, within MPMX19_03332at 685.040 kb on - strand, within MPMX19_03332at 685.040 kb on - strand, within MPMX19_03332at 685.040 kb on - strand, within MPMX19_03332at 685.040 kb on - strand, within MPMX19_03332at 685.105 kb on + strand, within MPMX19_03332at 685.106 kb on - strand, within MPMX19_03332at 685.108 kb on + strand, within MPMX19_03332at 685.108 kb on + strand, within MPMX19_03332at 685.109 kb on - strand, within MPMX19_03332at 685.109 kb on - strand, within MPMX19_03332at 685.109 kb on - strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.396 kb on + strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.397 kb on - strand, within MPMX19_03332at 685.420 kb on + strand, within MPMX19_03332at 685.420 kb on + strand, within MPMX19_03332at 685.421 kb on - strand, within MPMX19_03332at 685.468 kb on + strand, within MPMX19_03332

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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683,450 + MPMX19_03330 0.88 -1.8
683,451 - MPMX19_03330 0.88 +0.6
683,451 - MPMX19_03330 0.88 +0.7
683,642 + -1.0
683,643 - -1.5
683,864 + -0.8
683,864 + -0.2
683,865 - -1.1
683,946 + MPMX19_03331 0.11 -2.0
684,069 + MPMX19_03331 0.28 +0.5
684,069 + MPMX19_03331 0.28 -0.1
684,180 - MPMX19_03331 0.43 -1.0
684,180 - MPMX19_03331 0.43 -0.2
684,180 - MPMX19_03331 0.43 -1.4
684,458 + MPMX19_03331 0.81 +0.0
684,458 + MPMX19_03331 0.81 -1.4
684,458 + MPMX19_03331 0.81 +1.1
684,459 - MPMX19_03331 0.81 -1.0
684,459 - MPMX19_03331 0.81 +0.2
684,459 - MPMX19_03331 0.81 +0.0
684,459 - MPMX19_03331 0.81 -0.8
684,459 - MPMX19_03331 0.81 -0.4
684,459 - MPMX19_03331 0.81 -1.4
684,459 - MPMX19_03331 0.81 -1.7
684,775 + -0.8
684,775 + +0.5
684,775 + +0.3
684,775 + -1.2
684,775 + -0.9
684,775 + -0.5
684,775 + +3.0
684,775 + +1.0
684,775 + -0.4
684,776 - +1.0
684,776 - +0.8
684,776 - -0.4
684,776 - -0.4
684,776 - -2.6
684,776 - +0.3
684,776 - +0.9
684,776 - -0.8
684,830 - -0.8
684,830 - +2.1
685,021 + MPMX19_03332 0.18 -1.4
685,021 + MPMX19_03332 0.18 -0.2
685,022 - MPMX19_03332 0.18 +0.6
685,039 + MPMX19_03332 0.18 -0.4
685,039 + MPMX19_03332 0.18 -2.8
685,039 + MPMX19_03332 0.18 -1.8
685,039 + MPMX19_03332 0.18 -0.8
685,039 + MPMX19_03332 0.18 -0.8
685,039 + MPMX19_03332 0.18 -0.5
685,039 + MPMX19_03332 0.18 -1.5
685,040 - MPMX19_03332 0.18 +0.6
685,040 - MPMX19_03332 0.18 -0.2
685,040 - MPMX19_03332 0.18 +0.0
685,040 - MPMX19_03332 0.18 -0.7
685,105 + MPMX19_03332 0.21 -1.8
685,106 - MPMX19_03332 0.21 -0.3
685,108 + MPMX19_03332 0.21 -1.3
685,108 + MPMX19_03332 0.21 -0.7
685,109 - MPMX19_03332 0.21 -0.5
685,109 - MPMX19_03332 0.21 +1.6
685,109 - MPMX19_03332 0.21 -1.0
685,396 + MPMX19_03332 0.33 -0.0
685,396 + MPMX19_03332 0.33 +0.5
685,396 + MPMX19_03332 0.33 -0.7
685,396 + MPMX19_03332 0.33 +1.0
685,396 + MPMX19_03332 0.33 -0.4
685,396 + MPMX19_03332 0.33 -0.1
685,396 + MPMX19_03332 0.33 -1.2
685,396 + MPMX19_03332 0.33 -0.5
685,396 + MPMX19_03332 0.33 -1.7
685,396 + MPMX19_03332 0.33 +0.8
685,396 + MPMX19_03332 0.33 -0.3
685,396 + MPMX19_03332 0.33 +0.4
685,396 + MPMX19_03332 0.33 +0.4
685,396 + MPMX19_03332 0.33 -0.9
685,396 + MPMX19_03332 0.33 -0.4
685,396 + MPMX19_03332 0.33 -2.1
685,396 + MPMX19_03332 0.33 +0.3
685,396 + MPMX19_03332 0.33 -1.0
685,396 + MPMX19_03332 0.33 +0.1
685,396 + MPMX19_03332 0.33 -0.7
685,396 + MPMX19_03332 0.33 -1.0
685,396 + MPMX19_03332 0.33 +0.6
685,396 + MPMX19_03332 0.33 -1.0
685,396 + MPMX19_03332 0.33 -0.6
685,396 + MPMX19_03332 0.33 -2.1
685,396 + MPMX19_03332 0.33 -0.7
685,397 - MPMX19_03332 0.33 +1.0
685,397 - MPMX19_03332 0.33 -0.5
685,397 - MPMX19_03332 0.33 -1.0
685,397 - MPMX19_03332 0.33 +0.2
685,397 - MPMX19_03332 0.33 -0.1
685,397 - MPMX19_03332 0.33 -0.5
685,397 - MPMX19_03332 0.33 -0.2
685,397 - MPMX19_03332 0.33 +0.6
685,397 - MPMX19_03332 0.33 -0.2
685,397 - MPMX19_03332 0.33 -0.5
685,397 - MPMX19_03332 0.33 +0.6
685,397 - MPMX19_03332 0.33 -2.3
685,397 - MPMX19_03332 0.33 -0.3
685,397 - MPMX19_03332 0.33 -0.4
685,397 - MPMX19_03332 0.33 -0.5
685,397 - MPMX19_03332 0.33 -1.0
685,397 - MPMX19_03332 0.33 -0.7
685,397 - MPMX19_03332 0.33 +0.6
685,397 - MPMX19_03332 0.33 -0.9
685,397 - MPMX19_03332 0.33 +0.4
685,397 - MPMX19_03332 0.33 -1.3
685,420 + MPMX19_03332 0.34 -1.1
685,420 + MPMX19_03332 0.34 +0.2
685,421 - MPMX19_03332 0.34 -0.5
685,468 + MPMX19_03332 0.36 -0.5

Or see this region's nucleotide sequence