Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03321 and MPMX19_03322 are separated by 775 nucleotides MPMX19_03322 and MPMX19_03323 are separated by 102 nucleotides
MPMX19_03321: MPMX19_03321 - hypothetical protein, at 671,327 to 672,181
_03321
MPMX19_03322: MPMX19_03322 - hypothetical protein, at 672,957 to 673,919
_03322
MPMX19_03323: MPMX19_03323 - hypothetical protein, at 674,022 to 674,948
_03323
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.090 kb on + strand, within MPMX19_03321 at 672.090 kb on + strand, within MPMX19_03321 at 672.111 kb on + strand at 672.111 kb on + strand at 672.112 kb on - strand at 672.132 kb on + strand at 672.132 kb on + strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.582 kb on + strand at 672.976 kb on + strand at 672.976 kb on + strand at 672.976 kb on + strand at 672.977 kb on - strand at 673.159 kb on + strand, within MPMX19_03322 at 673.159 kb on + strand, within MPMX19_03322 at 673.180 kb on + strand, within MPMX19_03322 at 673.181 kb on - strand, within MPMX19_03322 at 673.181 kb on - strand, within MPMX19_03322 at 673.181 kb on - strand, within MPMX19_03322 at 673.396 kb on + strand, within MPMX19_03322 at 673.396 kb on + strand, within MPMX19_03322 at 673.396 kb on + strand, within MPMX19_03322 at 673.397 kb on - strand, within MPMX19_03322 at 673.397 kb on - strand, within MPMX19_03322 at 673.483 kb on + strand, within MPMX19_03322 at 673.483 kb on + strand, within MPMX19_03322 at 673.483 kb on + strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.484 kb on - strand, within MPMX19_03322 at 673.697 kb on - strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.732 kb on + strand, within MPMX19_03322 at 673.733 kb on - strand, within MPMX19_03322 at 673.733 kb on - strand, within MPMX19_03322 at 673.927 kb on + strand at 673.927 kb on + strand at 673.927 kb on + strand at 673.927 kb on + strand at 673.928 kb on - strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.941 kb on + strand at 673.942 kb on - strand at 673.942 kb on - strand at 673.942 kb on - strand at 673.942 kb on - strand at 673.942 kb on - strand at 673.942 kb on - strand at 673.942 kb on - strand at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.392 kb on + strand, within MPMX19_03323 at 674.393 kb on - strand, within MPMX19_03323 at 674.393 kb on - strand, within MPMX19_03323 at 674.393 kb on - strand, within MPMX19_03323 at 674.393 kb on - strand, within MPMX19_03323 at 674.393 kb on - strand, within MPMX19_03323 at 674.490 kb on + strand, within MPMX19_03323 at 674.491 kb on - strand, within MPMX19_03323 at 674.491 kb on - strand, within MPMX19_03323 at 674.491 kb on - strand, within MPMX19_03323 at 674.732 kb on - strand, within MPMX19_03323
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 672,090 + MPMX19_03321 0.89 +2.0 672,090 + MPMX19_03321 0.89 -1.1 672,111 + -0.1 672,111 + -1.2 672,112 - -0.5 672,132 + -0.4 672,132 + -1.9 672,133 - -1.4 672,133 - +0.0 672,133 - -0.2 672,135 + +0.2 672,135 + -1.4 672,135 + -1.3 672,135 + +0.9 672,135 + -0.2 672,135 + -0.3 672,135 + -0.7 672,135 + -0.6 672,135 + -2.4 672,136 - -0.6 672,136 - -2.1 672,136 - -1.5 672,136 - -0.7 672,136 - -0.1 672,136 - -0.6 672,177 + -0.8 672,177 + -1.7 672,177 + +0.4 672,177 + +0.6 672,177 + -0.1 672,177 + +1.1 672,178 - -0.6 672,178 - -1.2 672,178 - -0.4 672,178 - -0.5 672,582 + -1.4 672,976 + +0.0 672,976 + -0.6 672,976 + +0.6 672,977 - -0.1 673,159 + MPMX19_03322 0.21 -0.8 673,159 + MPMX19_03322 0.21 -1.3 673,180 + MPMX19_03322 0.23 -1.4 673,181 - MPMX19_03322 0.23 +0.9 673,181 - MPMX19_03322 0.23 +0.2 673,181 - MPMX19_03322 0.23 +0.9 673,396 + MPMX19_03322 0.46 -1.2 673,396 + MPMX19_03322 0.46 -0.0 673,396 + MPMX19_03322 0.46 -2.2 673,397 - MPMX19_03322 0.46 -0.5 673,397 - MPMX19_03322 0.46 -0.7 673,483 + MPMX19_03322 0.55 -1.5 673,483 + MPMX19_03322 0.55 -2.8 673,483 + MPMX19_03322 0.55 +0.1 673,484 - MPMX19_03322 0.55 -1.0 673,484 - MPMX19_03322 0.55 -0.5 673,484 - MPMX19_03322 0.55 -1.8 673,484 - MPMX19_03322 0.55 -0.4 673,484 - MPMX19_03322 0.55 -0.7 673,484 - MPMX19_03322 0.55 -0.7 673,484 - MPMX19_03322 0.55 -1.5 673,697 - MPMX19_03322 0.77 -0.5 673,732 + MPMX19_03322 0.80 -3.1 673,732 + MPMX19_03322 0.80 +1.2 673,732 + MPMX19_03322 0.80 -0.4 673,732 + MPMX19_03322 0.80 +0.2 673,732 + MPMX19_03322 0.80 -1.8 673,732 + MPMX19_03322 0.80 +0.8 673,733 - MPMX19_03322 0.81 +0.4 673,733 - MPMX19_03322 0.81 -0.1 673,927 + -0.5 673,927 + +0.5 673,927 + -1.9 673,927 + -0.4 673,928 - +0.5 673,941 + -0.1 673,941 + +0.2 673,941 + -0.1 673,941 + -0.7 673,941 + +0.4 673,941 + +0.5 673,941 + +0.6 673,941 + +0.2 673,942 - +1.6 673,942 - -1.0 673,942 - +0.6 673,942 - +0.4 673,942 - +0.2 673,942 - -0.6 673,942 - -0.3 674,392 + MPMX19_03323 0.40 +1.1 674,392 + MPMX19_03323 0.40 -0.2 674,392 + MPMX19_03323 0.40 -0.6 674,392 + MPMX19_03323 0.40 +1.3 674,392 + MPMX19_03323 0.40 -0.2 674,392 + MPMX19_03323 0.40 -0.5 674,392 + MPMX19_03323 0.40 -0.1 674,393 - MPMX19_03323 0.40 -0.6 674,393 - MPMX19_03323 0.40 -0.5 674,393 - MPMX19_03323 0.40 +0.0 674,393 - MPMX19_03323 0.40 -1.0 674,393 - MPMX19_03323 0.40 -0.9 674,490 + MPMX19_03323 0.50 +0.6 674,491 - MPMX19_03323 0.51 -0.4 674,491 - MPMX19_03323 0.51 -0.2 674,491 - MPMX19_03323 0.51 -3.2 674,732 - MPMX19_03323 0.77 -0.9
Or see this region's nucleotide sequence