Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03321

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03320 and MPMX19_03321 are separated by 19 nucleotidesMPMX19_03321 and MPMX19_03322 are separated by 775 nucleotides MPMX19_03320: MPMX19_03320 - hypothetical protein, at 669,931 to 671,307 _03320 MPMX19_03321: MPMX19_03321 - hypothetical protein, at 671,327 to 672,181 _03321 MPMX19_03322: MPMX19_03322 - hypothetical protein, at 672,957 to 673,919 _03322 Position (kb) 671 672 673Strain fitness (log2 ratio) -2 -1 0 1 2at 670.460 kb on - strand, within MPMX19_03320at 670.872 kb on + strand, within MPMX19_03320at 670.872 kb on + strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 671.349 kb on + strandat 671.349 kb on + strandat 671.349 kb on + strandat 671.350 kb on - strandat 671.350 kb on - strandat 671.350 kb on - strandat 671.367 kb on + strandat 671.368 kb on - strandat 671.368 kb on - strandat 671.368 kb on - strandat 671.368 kb on - strandat 671.368 kb on - strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.396 kb on + strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.397 kb on - strandat 671.538 kb on + strand, within MPMX19_03321at 671.538 kb on + strand, within MPMX19_03321at 671.538 kb on + strand, within MPMX19_03321at 671.553 kb on + strand, within MPMX19_03321at 671.553 kb on + strand, within MPMX19_03321at 671.553 kb on + strand, within MPMX19_03321at 671.554 kb on - strand, within MPMX19_03321at 671.554 kb on - strand, within MPMX19_03321at 671.554 kb on - strand, within MPMX19_03321at 671.712 kb on - strand, within MPMX19_03321at 671.740 kb on - strand, within MPMX19_03321at 671.740 kb on - strand, within MPMX19_03321at 671.740 kb on - strand, within MPMX19_03321at 671.740 kb on - strand, within MPMX19_03321at 671.772 kb on + strand, within MPMX19_03321at 671.773 kb on - strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.784 kb on + strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 671.785 kb on - strand, within MPMX19_03321at 672.090 kb on + strand, within MPMX19_03321at 672.090 kb on + strand, within MPMX19_03321at 672.111 kb on + strandat 672.111 kb on + strandat 672.112 kb on - strandat 672.132 kb on + strandat 672.132 kb on + strandat 672.133 kb on - strandat 672.133 kb on - strandat 672.133 kb on - strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.135 kb on + strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.136 kb on - strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.177 kb on + strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.178 kb on - strandat 672.582 kb on + strandat 672.976 kb on + strandat 672.976 kb on + strandat 672.976 kb on + strandat 672.977 kb on - strandat 673.159 kb on + strand, within MPMX19_03322at 673.159 kb on + strand, within MPMX19_03322at 673.180 kb on + strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322at 673.181 kb on - strand, within MPMX19_03322

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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670,460 - MPMX19_03320 0.38 +0.0
670,872 + MPMX19_03320 0.68 +0.7
670,872 + MPMX19_03320 0.68 +0.4
670,873 - MPMX19_03320 0.68 -0.9
670,873 - MPMX19_03320 0.68 +0.7
670,873 - MPMX19_03320 0.68 +1.0
670,873 - MPMX19_03320 0.68 -0.5
671,349 + -1.2
671,349 + +0.0
671,349 + -0.7
671,350 - -0.3
671,350 - +1.0
671,350 - -0.3
671,367 + +0.1
671,368 - -1.2
671,368 - -0.8
671,368 - +0.4
671,368 - -0.7
671,368 - -1.7
671,396 + -0.4
671,396 + -1.0
671,396 + -2.4
671,396 + -0.0
671,396 + +1.0
671,396 + +0.9
671,396 + -0.7
671,396 + +0.2
671,396 + -1.5
671,397 - -1.4
671,397 - -2.0
671,397 - -0.1
671,397 - +0.4
671,397 - -1.4
671,397 - +0.3
671,397 - +0.1
671,397 - -0.2
671,397 - -0.8
671,397 - -0.4
671,397 - -2.3
671,397 - +0.3
671,397 - +0.1
671,397 - -1.4
671,397 - +0.2
671,538 + MPMX19_03321 0.25 +0.1
671,538 + MPMX19_03321 0.25 -1.7
671,538 + MPMX19_03321 0.25 -0.4
671,553 + MPMX19_03321 0.26 -2.2
671,553 + MPMX19_03321 0.26 +0.7
671,553 + MPMX19_03321 0.26 -0.9
671,554 - MPMX19_03321 0.27 +0.4
671,554 - MPMX19_03321 0.27 -0.1
671,554 - MPMX19_03321 0.27 -1.4
671,712 - MPMX19_03321 0.45 -1.8
671,740 - MPMX19_03321 0.48 -1.4
671,740 - MPMX19_03321 0.48 +1.2
671,740 - MPMX19_03321 0.48 -0.8
671,740 - MPMX19_03321 0.48 -1.0
671,772 + MPMX19_03321 0.52 -1.4
671,773 - MPMX19_03321 0.52 -1.8
671,784 + MPMX19_03321 0.53 -2.1
671,784 + MPMX19_03321 0.53 -1.0
671,784 + MPMX19_03321 0.53 +0.8
671,784 + MPMX19_03321 0.53 -2.1
671,784 + MPMX19_03321 0.53 -0.6
671,784 + MPMX19_03321 0.53 -1.1
671,784 + MPMX19_03321 0.53 +0.2
671,784 + MPMX19_03321 0.53 -0.6
671,784 + MPMX19_03321 0.53 -1.7
671,785 - MPMX19_03321 0.54 -1.8
671,785 - MPMX19_03321 0.54 -0.7
671,785 - MPMX19_03321 0.54 -2.7
671,785 - MPMX19_03321 0.54 +1.5
671,785 - MPMX19_03321 0.54 -0.6
671,785 - MPMX19_03321 0.54 +1.8
671,785 - MPMX19_03321 0.54 +0.0
671,785 - MPMX19_03321 0.54 +0.0
671,785 - MPMX19_03321 0.54 +0.2
672,090 + MPMX19_03321 0.89 +2.0
672,090 + MPMX19_03321 0.89 -1.1
672,111 + -0.1
672,111 + -1.2
672,112 - -0.5
672,132 + -0.4
672,132 + -1.9
672,133 - -1.4
672,133 - +0.0
672,133 - -0.2
672,135 + +0.2
672,135 + -1.4
672,135 + -1.3
672,135 + +0.9
672,135 + -0.2
672,135 + -0.3
672,135 + -0.7
672,135 + -0.6
672,135 + -2.4
672,136 - -0.6
672,136 - -2.1
672,136 - -1.5
672,136 - -0.7
672,136 - -0.1
672,136 - -0.6
672,177 + -0.8
672,177 + -1.7
672,177 + +0.4
672,177 + +0.6
672,177 + -0.1
672,177 + +1.1
672,178 - -0.6
672,178 - -1.2
672,178 - -0.4
672,178 - -0.5
672,582 + -1.4
672,976 + +0.0
672,976 + -0.6
672,976 + +0.6
672,977 - -0.1
673,159 + MPMX19_03322 0.21 -0.8
673,159 + MPMX19_03322 0.21 -1.3
673,180 + MPMX19_03322 0.23 -1.4
673,181 - MPMX19_03322 0.23 +0.9
673,181 - MPMX19_03322 0.23 +0.2
673,181 - MPMX19_03322 0.23 +0.9

Or see this region's nucleotide sequence