Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03319 and MPMX19_03320 are separated by 28 nucleotides MPMX19_03320 and MPMX19_03321 are separated by 19 nucleotides
MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902
_03319
MPMX19_03320: MPMX19_03320 - hypothetical protein, at 669,931 to 671,307
_03320
MPMX19_03321: MPMX19_03321 - hypothetical protein, at 671,327 to 672,181
_03321
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -2
-1
0
1
2 at 668.970 kb on + strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.376 kb on + strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.452 kb on - strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.604 kb on + strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.701 kb on + strand, within MPMX19_03319 at 669.721 kb on + strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 670.460 kb on - strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 671.349 kb on + strand at 671.349 kb on + strand at 671.349 kb on + strand at 671.350 kb on - strand at 671.350 kb on - strand at 671.350 kb on - strand at 671.367 kb on + strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.368 kb on - strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.396 kb on + strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.397 kb on - strand at 671.538 kb on + strand, within MPMX19_03321 at 671.538 kb on + strand, within MPMX19_03321 at 671.538 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.553 kb on + strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.554 kb on - strand, within MPMX19_03321 at 671.712 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.740 kb on - strand, within MPMX19_03321 at 671.772 kb on + strand, within MPMX19_03321 at 671.773 kb on - strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.784 kb on + strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 671.785 kb on - strand, within MPMX19_03321 at 672.090 kb on + strand, within MPMX19_03321 at 672.090 kb on + strand, within MPMX19_03321 at 672.111 kb on + strand at 672.111 kb on + strand at 672.112 kb on - strand at 672.132 kb on + strand at 672.132 kb on + strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.133 kb on - strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.177 kb on + strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 668,970 + MPMX19_03319 0.52 -0.1 668,971 - MPMX19_03319 0.52 +0.0 668,971 - MPMX19_03319 0.52 +0.3 669,164 + MPMX19_03319 0.62 -0.2 669,164 + MPMX19_03319 0.62 -1.8 669,164 + MPMX19_03319 0.62 -2.0 669,165 - MPMX19_03319 0.62 -0.9 669,165 - MPMX19_03319 0.62 +0.3 669,165 - MPMX19_03319 0.62 +1.1 669,165 - MPMX19_03319 0.62 -0.7 669,165 - MPMX19_03319 0.62 -0.2 669,356 - MPMX19_03319 0.72 -1.0 669,356 - MPMX19_03319 0.72 -0.7 669,356 - MPMX19_03319 0.72 -0.5 669,356 - MPMX19_03319 0.72 -1.4 669,376 + MPMX19_03319 0.73 -1.3 669,377 - MPMX19_03319 0.73 -1.4 669,377 - MPMX19_03319 0.73 -1.5 669,452 - MPMX19_03319 0.77 +0.4 669,592 + MPMX19_03319 0.84 -0.3 669,592 + MPMX19_03319 0.84 -1.7 669,592 + MPMX19_03319 0.84 +0.3 669,592 + MPMX19_03319 0.84 -0.2 669,592 + MPMX19_03319 0.84 -1.0 669,592 + MPMX19_03319 0.84 -1.7 669,593 - MPMX19_03319 0.84 -1.7 669,593 - MPMX19_03319 0.84 +0.0 669,593 - MPMX19_03319 0.84 -0.5 669,593 - MPMX19_03319 0.84 -0.0 669,593 - MPMX19_03319 0.84 +1.0 669,604 + MPMX19_03319 0.85 -0.4 669,605 - MPMX19_03319 0.85 -0.5 669,605 - MPMX19_03319 0.85 -1.1 669,605 - MPMX19_03319 0.85 -0.2 669,605 - MPMX19_03319 0.85 -1.5 669,675 - MPMX19_03319 0.88 +1.0 669,675 - MPMX19_03319 0.88 -1.8 669,675 - MPMX19_03319 0.88 -0.9 669,675 - MPMX19_03319 0.88 -2.1 669,701 + MPMX19_03319 0.90 -1.5 669,721 + +0.6 669,722 - -2.1 669,722 - -1.0 669,722 - +0.6 669,772 + -0.5 669,772 + -0.2 669,772 + -0.7 669,772 + -0.1 669,772 + -0.4 669,772 + -2.4 669,773 - -1.8 669,773 - -0.7 669,773 - -0.7 669,773 - -0.1 670,460 - MPMX19_03320 0.38 +0.0 670,872 + MPMX19_03320 0.68 +0.7 670,872 + MPMX19_03320 0.68 +0.4 670,873 - MPMX19_03320 0.68 -0.9 670,873 - MPMX19_03320 0.68 +0.7 670,873 - MPMX19_03320 0.68 +1.0 670,873 - MPMX19_03320 0.68 -0.5 671,349 + -1.2 671,349 + +0.0 671,349 + -0.7 671,350 - -0.3 671,350 - +1.0 671,350 - -0.3 671,367 + +0.1 671,368 - -1.2 671,368 - -0.8 671,368 - +0.4 671,368 - -0.7 671,368 - -1.7 671,396 + -0.4 671,396 + -1.0 671,396 + -2.4 671,396 + -0.0 671,396 + +1.0 671,396 + +0.9 671,396 + -0.7 671,396 + +0.2 671,396 + -1.5 671,397 - -1.4 671,397 - -2.0 671,397 - -0.1 671,397 - +0.4 671,397 - -1.4 671,397 - +0.3 671,397 - +0.1 671,397 - -0.2 671,397 - -0.8 671,397 - -0.4 671,397 - -2.3 671,397 - +0.3 671,397 - +0.1 671,397 - -1.4 671,397 - +0.2 671,538 + MPMX19_03321 0.25 +0.1 671,538 + MPMX19_03321 0.25 -1.7 671,538 + MPMX19_03321 0.25 -0.4 671,553 + MPMX19_03321 0.26 -2.2 671,553 + MPMX19_03321 0.26 +0.7 671,553 + MPMX19_03321 0.26 -0.9 671,554 - MPMX19_03321 0.27 +0.4 671,554 - MPMX19_03321 0.27 -0.1 671,554 - MPMX19_03321 0.27 -1.4 671,712 - MPMX19_03321 0.45 -1.8 671,740 - MPMX19_03321 0.48 -1.4 671,740 - MPMX19_03321 0.48 +1.2 671,740 - MPMX19_03321 0.48 -0.8 671,740 - MPMX19_03321 0.48 -1.0 671,772 + MPMX19_03321 0.52 -1.4 671,773 - MPMX19_03321 0.52 -1.8 671,784 + MPMX19_03321 0.53 -2.1 671,784 + MPMX19_03321 0.53 -1.0 671,784 + MPMX19_03321 0.53 +0.8 671,784 + MPMX19_03321 0.53 -2.1 671,784 + MPMX19_03321 0.53 -0.6 671,784 + MPMX19_03321 0.53 -1.1 671,784 + MPMX19_03321 0.53 +0.2 671,784 + MPMX19_03321 0.53 -0.6 671,784 + MPMX19_03321 0.53 -1.7 671,785 - MPMX19_03321 0.54 -1.8 671,785 - MPMX19_03321 0.54 -0.7 671,785 - MPMX19_03321 0.54 -2.7 671,785 - MPMX19_03321 0.54 +1.5 671,785 - MPMX19_03321 0.54 -0.6 671,785 - MPMX19_03321 0.54 +1.8 671,785 - MPMX19_03321 0.54 +0.0 671,785 - MPMX19_03321 0.54 +0.0 671,785 - MPMX19_03321 0.54 +0.2 672,090 + MPMX19_03321 0.89 +2.0 672,090 + MPMX19_03321 0.89 -1.1 672,111 + -0.1 672,111 + -1.2 672,112 - -0.5 672,132 + -0.4 672,132 + -1.9 672,133 - -1.4 672,133 - +0.0 672,133 - -0.2 672,135 + +0.2 672,135 + -1.4 672,135 + -1.3 672,135 + +0.9 672,135 + -0.2 672,135 + -0.3 672,135 + -0.7 672,135 + -0.6 672,135 + -2.4 672,136 - -0.6 672,136 - -2.1 672,136 - -1.5 672,136 - -0.7 672,136 - -0.1 672,136 - -0.6 672,177 + -0.8 672,177 + -1.7 672,177 + +0.4 672,177 + +0.6 672,177 + -0.1 672,177 + +1.1 672,178 - -0.6 672,178 - -1.2 672,178 - -0.4 672,178 - -0.5
Or see this region's nucleotide sequence