Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03313

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03312 and MPMX19_03313 are separated by 115 nucleotidesMPMX19_03313 and MPMX19_03314 are separated by 92 nucleotidesMPMX19_03314 and MPMX19_03315 are separated by 147 nucleotides MPMX19_03312: MPMX19_03312 - Galactose/methyl galactoside import ATP-binding protein MglA, at 659,276 to 660,850 _03312 MPMX19_03313: MPMX19_03313 - Ureidoglycolate lyase, at 660,966 to 661,811 _03313 MPMX19_03314: MPMX19_03314 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 661,904 to 662,647 _03314 MPMX19_03315: MPMX19_03315 - Transcriptional regulator KdgR, at 662,795 to 663,610 _03315 Position (kb) 660 661 662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.610 kb on - strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.637 kb on - strand, within MPMX19_03312at 660.979 kb on + strandat 660.979 kb on + strandat 660.980 kb on - strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.046 kb on - strandat 661.046 kb on - strandat 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.364 kb on - strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.574 kb on - strand, within MPMX19_03313at 661.745 kb on + strandat 661.746 kb on - strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.909 kb on + strandat 661.910 kb on - strandat 661.910 kb on - strandat 661.977 kb on + strandat 661.978 kb on - strandat 661.978 kb on - strandat 662.038 kb on + strand, within MPMX19_03314at 662.061 kb on + strand, within MPMX19_03314at 662.062 kb on - strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.316 kb on + strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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660,213 + MPMX19_03312 0.59 +0.6
660,213 + MPMX19_03312 0.59 -0.8
660,213 + MPMX19_03312 0.59 -0.1
660,213 + MPMX19_03312 0.59 +0.4
660,213 + MPMX19_03312 0.59 -1.2
660,213 + MPMX19_03312 0.59 +0.6
660,213 + MPMX19_03312 0.59 -2.9
660,213 + MPMX19_03312 0.59 -1.0
660,214 - MPMX19_03312 0.60 -0.5
660,214 - MPMX19_03312 0.60 +0.6
660,214 - MPMX19_03312 0.60 +1.0
660,214 - MPMX19_03312 0.60 +0.8
660,214 - MPMX19_03312 0.60 -0.5
660,214 - MPMX19_03312 0.60 -1.2
660,214 - MPMX19_03312 0.60 -0.6
660,214 - MPMX19_03312 0.60 -0.2
660,214 - MPMX19_03312 0.60 -0.9
660,214 - MPMX19_03312 0.60 +0.2
660,214 - MPMX19_03312 0.60 -1.2
660,214 - MPMX19_03312 0.60 +0.2
660,214 - MPMX19_03312 0.60 +1.3
660,214 - MPMX19_03312 0.60 +0.0
660,214 - MPMX19_03312 0.60 +2.2
660,609 + MPMX19_03312 0.85 -0.2
660,609 + MPMX19_03312 0.85 -0.2
660,609 + MPMX19_03312 0.85 +1.0
660,609 + MPMX19_03312 0.85 -0.7
660,610 - MPMX19_03312 0.85 +0.0
660,636 + MPMX19_03312 0.86 -2.2
660,636 + MPMX19_03312 0.86 -1.0
660,636 + MPMX19_03312 0.86 +0.8
660,637 - MPMX19_03312 0.86 -0.7
660,979 + -0.2
660,979 + +0.3
660,980 - -1.8
661,045 + -0.4
661,045 + -0.7
661,045 + -0.5
661,046 - +0.2
661,046 - -0.4
661,135 + MPMX19_03313 0.20 -1.2
661,135 + MPMX19_03313 0.20 -0.7
661,135 + MPMX19_03313 0.20 +0.8
661,135 + MPMX19_03313 0.20 +0.3
661,136 - MPMX19_03313 0.20 +0.0
661,136 - MPMX19_03313 0.20 +0.1
661,136 - MPMX19_03313 0.20 -1.5
661,136 - MPMX19_03313 0.20 -1.2
661,159 + MPMX19_03313 0.23 -0.7
661,159 + MPMX19_03313 0.23 +1.3
661,159 + MPMX19_03313 0.23 +0.2
661,159 + MPMX19_03313 0.23 +0.8
661,159 + MPMX19_03313 0.23 -0.7
661,159 + MPMX19_03313 0.23 -1.7
661,160 - MPMX19_03313 0.23 -1.2
661,160 - MPMX19_03313 0.23 -1.1
661,364 - MPMX19_03313 0.47 +0.8
661,402 + MPMX19_03313 0.52 +1.2
661,402 + MPMX19_03313 0.52 -0.4
661,402 + MPMX19_03313 0.52 +0.0
661,402 + MPMX19_03313 0.52 +1.6
661,402 + MPMX19_03313 0.52 -0.4
661,403 - MPMX19_03313 0.52 -1.7
661,403 - MPMX19_03313 0.52 +0.3
661,403 - MPMX19_03313 0.52 +0.2
661,403 - MPMX19_03313 0.52 +1.3
661,403 - MPMX19_03313 0.52 +1.1
661,403 - MPMX19_03313 0.52 -0.4
661,403 - MPMX19_03313 0.52 +0.1
661,403 - MPMX19_03313 0.52 +0.6
661,403 - MPMX19_03313 0.52 +0.2
661,403 - MPMX19_03313 0.52 -0.5
661,403 - MPMX19_03313 0.52 -0.9
661,403 - MPMX19_03313 0.52 -1.4
661,403 - MPMX19_03313 0.52 -0.5
661,403 - MPMX19_03313 0.52 -0.7
661,403 - MPMX19_03313 0.52 -0.8
661,403 - MPMX19_03313 0.52 -1.5
661,573 + MPMX19_03313 0.72 +0.9
661,573 + MPMX19_03313 0.72 -0.2
661,574 - MPMX19_03313 0.72 -0.5
661,745 + -1.8
661,746 - -0.2
661,811 + -0.6
661,811 + +0.6
661,811 + -1.1
661,812 - -1.5
661,812 - -2.4
661,812 - +0.3
661,812 - +0.1
661,909 + -0.5
661,910 - +0.3
661,910 - -0.2
661,977 + -0.2
661,978 - -0.2
661,978 - +0.0
662,038 + MPMX19_03314 0.18 -0.0
662,061 + MPMX19_03314 0.21 -0.2
662,062 - MPMX19_03314 0.21 -0.5
662,151 + MPMX19_03314 0.33 -0.2
662,151 + MPMX19_03314 0.33 +0.5
662,151 + MPMX19_03314 0.33 -0.6
662,151 + MPMX19_03314 0.33 +1.6
662,151 + MPMX19_03314 0.33 +1.0
662,152 - MPMX19_03314 0.33 -1.4
662,152 - MPMX19_03314 0.33 +0.2
662,152 - MPMX19_03314 0.33 -0.4
662,205 + MPMX19_03314 0.40 -0.8
662,205 + MPMX19_03314 0.40 -1.5
662,316 + MPMX19_03314 0.55 -2.0
662,317 - MPMX19_03314 0.56 -0.9
662,317 - MPMX19_03314 0.56 -0.3
662,394 + MPMX19_03314 0.66 -0.7
662,394 + MPMX19_03314 0.66 -0.3
662,395 - MPMX19_03314 0.66 +1.0
662,395 - MPMX19_03314 0.66 -0.0
662,395 - MPMX19_03314 0.66 +0.4

Or see this region's nucleotide sequence