Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03308

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03307 and MPMX19_03308 are separated by 42 nucleotidesMPMX19_03308 and MPMX19_03309 are separated by 4 nucleotides MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186 _03307 MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044 _03308 MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074 _03309 Position (kb) 655 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.352 kb on - strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.242 kb on + strandat 655.243 kb on - strandat 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.666 kb on + strand, within MPMX19_03308at 655.667 kb on - strand, within MPMX19_03308at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.315 kb on - strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.438 kb on - strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.899 kb on + strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.903 kb on - strand, within MPMX19_03309at 656.920 kb on + strand, within MPMX19_03309

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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654,255 + MPMX19_03307 0.39 -0.5
654,255 + MPMX19_03307 0.39 +0.2
654,255 + MPMX19_03307 0.39 -1.5
654,352 - MPMX19_03307 0.45 -0.6
654,810 + MPMX19_03307 0.75 +0.3
654,810 + MPMX19_03307 0.75 +0.4
654,810 + MPMX19_03307 0.75 -0.5
654,810 + MPMX19_03307 0.75 +0.2
654,810 + MPMX19_03307 0.75 -2.8
654,810 + MPMX19_03307 0.75 -0.5
654,810 + MPMX19_03307 0.75 -0.5
654,810 + MPMX19_03307 0.75 -0.0
654,810 + MPMX19_03307 0.75 -0.1
654,810 + MPMX19_03307 0.75 -0.2
654,810 + MPMX19_03307 0.75 -1.4
654,810 + MPMX19_03307 0.75 -0.5
654,811 - MPMX19_03307 0.75 +0.0
654,811 - MPMX19_03307 0.75 +0.6
654,811 - MPMX19_03307 0.75 -1.2
654,811 - MPMX19_03307 0.75 +0.4
654,811 - MPMX19_03307 0.75 +0.1
654,811 - MPMX19_03307 0.75 -1.1
654,811 - MPMX19_03307 0.75 -1.5
654,811 - MPMX19_03307 0.75 -1.0
654,999 + MPMX19_03307 0.88 -0.4
654,999 + MPMX19_03307 0.88 -0.2
654,999 + MPMX19_03307 0.88 -1.5
655,000 - MPMX19_03307 0.88 +0.6
655,000 - MPMX19_03307 0.88 +1.4
655,000 - MPMX19_03307 0.88 -1.8
655,000 - MPMX19_03307 0.88 -0.8
655,000 - MPMX19_03307 0.88 +0.6
655,242 + -0.7
655,243 - -1.2
655,410 + MPMX19_03308 0.22 -1.5
655,410 + MPMX19_03308 0.22 +0.8
655,410 + MPMX19_03308 0.22 -0.2
655,410 + MPMX19_03308 0.22 +0.2
655,411 - MPMX19_03308 0.22 +0.2
655,411 - MPMX19_03308 0.22 -0.2
655,411 - MPMX19_03308 0.22 -0.4
655,411 - MPMX19_03308 0.22 +0.6
655,411 - MPMX19_03308 0.22 -1.4
655,411 - MPMX19_03308 0.22 +0.9
655,666 + MPMX19_03308 0.54 +0.9
655,667 - MPMX19_03308 0.54 -0.1
656,314 + MPMX19_03309 0.26 -1.3
656,314 + MPMX19_03309 0.26 +0.4
656,314 + MPMX19_03309 0.26 -1.2
656,315 - MPMX19_03309 0.26 +0.6
656,437 + MPMX19_03309 0.38 -0.2
656,437 + MPMX19_03309 0.38 -0.4
656,437 + MPMX19_03309 0.38 -0.4
656,438 - MPMX19_03309 0.38 +0.0
656,456 + MPMX19_03309 0.40 -1.0
656,456 + MPMX19_03309 0.40 -0.7
656,456 + MPMX19_03309 0.40 -0.5
656,456 + MPMX19_03309 0.40 -2.1
656,456 + MPMX19_03309 0.40 +0.7
656,456 + MPMX19_03309 0.40 -0.7
656,456 + MPMX19_03309 0.40 -0.5
656,456 + MPMX19_03309 0.40 +0.2
656,456 + MPMX19_03309 0.40 -1.0
656,456 + MPMX19_03309 0.40 +0.4
656,457 - MPMX19_03309 0.40 +0.4
656,457 - MPMX19_03309 0.40 -1.0
656,457 - MPMX19_03309 0.40 -2.1
656,457 - MPMX19_03309 0.40 +0.0
656,457 - MPMX19_03309 0.40 -1.0
656,457 - MPMX19_03309 0.40 +0.5
656,644 + MPMX19_03309 0.58 -1.3
656,644 + MPMX19_03309 0.58 -0.3
656,644 + MPMX19_03309 0.58 -1.0
656,644 + MPMX19_03309 0.58 +1.3
656,644 + MPMX19_03309 0.58 -0.0
656,644 + MPMX19_03309 0.58 +0.1
656,645 - MPMX19_03309 0.58 -0.1
656,645 - MPMX19_03309 0.58 -0.4
656,645 - MPMX19_03309 0.58 -1.7
656,645 - MPMX19_03309 0.58 -0.2
656,645 - MPMX19_03309 0.58 +0.9
656,645 - MPMX19_03309 0.58 +0.9
656,719 + MPMX19_03309 0.65 -1.4
656,719 + MPMX19_03309 0.65 -0.7
656,719 + MPMX19_03309 0.65 +0.6
656,719 + MPMX19_03309 0.65 +1.2
656,720 - MPMX19_03309 0.65 -1.8
656,720 - MPMX19_03309 0.65 -0.1
656,720 - MPMX19_03309 0.65 -0.2
656,725 + MPMX19_03309 0.66 -0.0
656,725 + MPMX19_03309 0.66 -0.4
656,725 + MPMX19_03309 0.66 -0.0
656,725 + MPMX19_03309 0.66 -2.2
656,725 + MPMX19_03309 0.66 -0.1
656,725 + MPMX19_03309 0.66 -1.7
656,725 + MPMX19_03309 0.66 -1.0
656,725 + MPMX19_03309 0.66 -2.2
656,725 + MPMX19_03309 0.66 +0.1
656,726 - MPMX19_03309 0.66 -1.5
656,726 - MPMX19_03309 0.66 +2.4
656,899 + MPMX19_03309 0.83 -1.0
656,900 - MPMX19_03309 0.83 -2.4
656,900 - MPMX19_03309 0.83 +0.6
656,902 + MPMX19_03309 0.83 -0.7
656,902 + MPMX19_03309 0.83 -0.4
656,903 - MPMX19_03309 0.83 -0.9
656,920 + MPMX19_03309 0.85 +0.1

Or see this region's nucleotide sequence