Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03297 and MPMX19_03298 are separated by 11 nucleotides MPMX19_03298 and MPMX19_03299 are separated by 29 nucleotides MPMX19_03299 and MPMX19_03300 are separated by 227 nucleotides
MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803
_03297
MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546
_03298
MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475
_03299
MPMX19_03300: MPMX19_03300 - Erythritol/L-threitol-binding protein, at 646,703 to 648,055
_03300
Position (kb)
645
646
647 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 644.808 kb on + strand at 645.008 kb on + strand, within MPMX19_03298 at 645.008 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.461 kb on + strand, within MPMX19_03298 at 645.462 kb on - strand, within MPMX19_03298 at 645.644 kb on + strand at 645.644 kb on + strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.645 kb on - strand at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.934 kb on + strand, within MPMX19_03299 at 645.935 kb on - strand, within MPMX19_03299 at 645.935 kb on - strand, within MPMX19_03299 at 645.935 kb on - strand, within MPMX19_03299 at 645.935 kb on - strand, within MPMX19_03299 at 645.935 kb on - strand, within MPMX19_03299 at 646.048 kb on + strand, within MPMX19_03299 at 646.048 kb on + strand, within MPMX19_03299 at 646.049 kb on - strand, within MPMX19_03299 at 646.049 kb on - strand, within MPMX19_03299 at 646.049 kb on - strand, within MPMX19_03299 at 646.049 kb on - strand, within MPMX19_03299 at 646.049 kb on - strand, within MPMX19_03299 at 646.138 kb on + strand, within MPMX19_03299 at 646.138 kb on + strand, within MPMX19_03299 at 646.138 kb on + strand, within MPMX19_03299 at 646.138 kb on + strand, within MPMX19_03299 at 646.138 kb on + strand, within MPMX19_03299 at 646.139 kb on - strand, within MPMX19_03299 at 646.139 kb on - strand, within MPMX19_03299 at 646.139 kb on - strand, within MPMX19_03299 at 646.139 kb on - strand, within MPMX19_03299 at 646.139 kb on - strand, within MPMX19_03299 at 646.583 kb on - strand at 646.841 kb on + strand, within MPMX19_03300 at 646.841 kb on + strand, within MPMX19_03300 at 646.841 kb on + strand, within MPMX19_03300 at 646.841 kb on + strand, within MPMX19_03300 at 646.842 kb on - strand, within MPMX19_03300 at 646.842 kb on - strand, within MPMX19_03300 at 646.842 kb on - strand, within MPMX19_03300 at 646.842 kb on - strand, within MPMX19_03300 at 647.036 kb on + strand, within MPMX19_03300 at 647.036 kb on + strand, within MPMX19_03300 at 647.036 kb on + strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.037 kb on - strand, within MPMX19_03300 at 647.327 kb on + strand, within MPMX19_03300 at 647.327 kb on + strand, within MPMX19_03300 at 647.327 kb on + strand, within MPMX19_03300 at 647.327 kb on + strand, within MPMX19_03300 at 647.327 kb on + strand, within MPMX19_03300 at 647.328 kb on - strand, within MPMX19_03300 at 647.328 kb on - strand, within MPMX19_03300 at 647.394 kb on - strand, within MPMX19_03300
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 644,808 + -0.0 645,008 + MPMX19_03298 0.26 -1.5 645,008 + MPMX19_03298 0.26 +0.6 645,461 + MPMX19_03298 0.88 -0.9 645,461 + MPMX19_03298 0.88 +1.6 645,462 - MPMX19_03298 0.88 -0.7 645,644 + -0.1 645,644 + -1.3 645,645 - -1.3 645,645 - +1.2 645,645 - -1.8 645,645 - -1.4 645,645 - -1.7 645,645 - -0.4 645,645 - -0.5 645,934 + MPMX19_03299 0.40 +0.8 645,934 + MPMX19_03299 0.40 -0.6 645,934 + MPMX19_03299 0.40 -0.3 645,934 + MPMX19_03299 0.40 +2.0 645,934 + MPMX19_03299 0.40 -0.1 645,934 + MPMX19_03299 0.40 -0.1 645,934 + MPMX19_03299 0.40 -1.3 645,935 - MPMX19_03299 0.40 -0.2 645,935 - MPMX19_03299 0.40 +0.2 645,935 - MPMX19_03299 0.40 +1.6 645,935 - MPMX19_03299 0.40 +1.5 645,935 - MPMX19_03299 0.40 +1.0 646,048 + MPMX19_03299 0.52 +0.1 646,048 + MPMX19_03299 0.52 -0.5 646,049 - MPMX19_03299 0.53 -1.5 646,049 - MPMX19_03299 0.53 -1.1 646,049 - MPMX19_03299 0.53 +1.1 646,049 - MPMX19_03299 0.53 +0.9 646,049 - MPMX19_03299 0.53 +1.3 646,138 + MPMX19_03299 0.62 +1.6 646,138 + MPMX19_03299 0.62 -0.6 646,138 + MPMX19_03299 0.62 -1.7 646,138 + MPMX19_03299 0.62 -0.0 646,138 + MPMX19_03299 0.62 +1.4 646,139 - MPMX19_03299 0.63 +0.2 646,139 - MPMX19_03299 0.63 -2.8 646,139 - MPMX19_03299 0.63 -1.7 646,139 - MPMX19_03299 0.63 -1.6 646,139 - MPMX19_03299 0.63 -0.0 646,583 - -0.8 646,841 + MPMX19_03300 0.10 +0.5 646,841 + MPMX19_03300 0.10 +0.9 646,841 + MPMX19_03300 0.10 +1.6 646,841 + MPMX19_03300 0.10 -1.5 646,842 - MPMX19_03300 0.10 +1.1 646,842 - MPMX19_03300 0.10 -1.3 646,842 - MPMX19_03300 0.10 +0.8 646,842 - MPMX19_03300 0.10 +0.0 647,036 + MPMX19_03300 0.25 +0.8 647,036 + MPMX19_03300 0.25 -0.7 647,036 + MPMX19_03300 0.25 -0.2 647,037 - MPMX19_03300 0.25 -0.5 647,037 - MPMX19_03300 0.25 -1.4 647,037 - MPMX19_03300 0.25 -0.7 647,037 - MPMX19_03300 0.25 -1.2 647,037 - MPMX19_03300 0.25 -0.9 647,037 - MPMX19_03300 0.25 +0.2 647,037 - MPMX19_03300 0.25 +0.4 647,327 + MPMX19_03300 0.46 -0.9 647,327 + MPMX19_03300 0.46 -0.8 647,327 + MPMX19_03300 0.46 -0.7 647,327 + MPMX19_03300 0.46 -1.8 647,327 + MPMX19_03300 0.46 +0.0 647,328 - MPMX19_03300 0.46 +0.3 647,328 - MPMX19_03300 0.46 -0.1 647,394 - MPMX19_03300 0.51 -0.8
Or see this region's nucleotide sequence