Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03293

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03291 and MPMX19_03292 are separated by 114 nucleotidesMPMX19_03292 and MPMX19_03293 are separated by 43 nucleotidesMPMX19_03293 and MPMX19_03294 are separated by 6 nucleotides MPMX19_03291: MPMX19_03291 - hypothetical protein, at 638,420 to 639,148 _03291 MPMX19_03292: MPMX19_03292 - hypothetical protein, at 639,263 to 639,808 _03292 MPMX19_03293: MPMX19_03293 - Taurine--pyruvate aminotransferase, at 639,852 to 641,168 _03293 MPMX19_03294: MPMX19_03294 - Homoserine kinase, at 641,175 to 642,212 _03294 Position (kb) 639 640 641 642Strain fitness (log2 ratio) -2 -1 0 1at 638.942 kb on + strand, within MPMX19_03291at 638.942 kb on + strand, within MPMX19_03291at 639.146 kb on + strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.255 kb on - strandat 639.497 kb on + strand, within MPMX19_03292at 639.736 kb on + strand, within MPMX19_03292at 639.736 kb on + strand, within MPMX19_03292at 639.737 kb on - strand, within MPMX19_03292at 639.743 kb on + strand, within MPMX19_03292at 639.743 kb on + strand, within MPMX19_03292at 639.744 kb on - strand, within MPMX19_03292at 640.246 kb on + strand, within MPMX19_03293at 640.246 kb on + strand, within MPMX19_03293at 640.247 kb on - strand, within MPMX19_03293at 640.247 kb on - strand, within MPMX19_03293at 640.410 kb on + strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.411 kb on - strand, within MPMX19_03293at 640.621 kb on + strand, within MPMX19_03293at 640.622 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.721 kb on - strand, within MPMX19_03293at 640.888 kb on + strand, within MPMX19_03293at 640.889 kb on - strand, within MPMX19_03293at 640.889 kb on - strand, within MPMX19_03293at 640.978 kb on + strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.979 kb on - strand, within MPMX19_03293at 640.991 kb on - strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.011 kb on + strand, within MPMX19_03293at 641.012 kb on - strand, within MPMX19_03293at 641.012 kb on - strand, within MPMX19_03293at 641.056 kb on + strandat 641.056 kb on + strandat 641.056 kb on + strandat 641.057 kb on - strandat 641.057 kb on - strandat 641.069 kb on - strandat 641.150 kb on - strandat 641.150 kb on - strandat 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.281 kb on + strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.282 kb on - strand, within MPMX19_03294at 641.407 kb on + strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.408 kb on - strand, within MPMX19_03294at 641.464 kb on + strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.465 kb on - strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.692 kb on + strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.693 kb on - strand, within MPMX19_03294at 641.767 kb on + strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.768 kb on - strand, within MPMX19_03294at 641.866 kb on + strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 641.867 kb on - strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.052 kb on + strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294at 642.053 kb on - strand, within MPMX19_03294

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
638,942 + MPMX19_03291 0.72 -0.7
638,942 + MPMX19_03291 0.72 +0.0
639,146 + -1.0
639,147 - +0.8
639,147 - +1.6
639,147 - -1.4
639,147 - +0.1
639,147 - -1.8
639,147 - -2.2
639,147 - -0.4
639,254 + -0.4
639,254 + -0.8
639,254 + -0.1
639,254 + -0.1
639,255 - -2.7
639,497 + MPMX19_03292 0.43 -1.4
639,736 + MPMX19_03292 0.87 -0.4
639,736 + MPMX19_03292 0.87 +0.0
639,737 - MPMX19_03292 0.87 -0.5
639,743 + MPMX19_03292 0.88 +0.0
639,743 + MPMX19_03292 0.88 -0.4
639,744 - MPMX19_03292 0.88 -1.2
640,246 + MPMX19_03293 0.30 -0.6
640,246 + MPMX19_03293 0.30 -0.1
640,247 - MPMX19_03293 0.30 +0.0
640,247 - MPMX19_03293 0.30 +0.4
640,410 + MPMX19_03293 0.42 -0.8
640,411 - MPMX19_03293 0.42 +1.5
640,411 - MPMX19_03293 0.42 -0.1
640,411 - MPMX19_03293 0.42 +0.2
640,621 + MPMX19_03293 0.58 +0.6
640,622 - MPMX19_03293 0.58 +0.8
640,721 - MPMX19_03293 0.66 -0.9
640,721 - MPMX19_03293 0.66 -1.4
640,721 - MPMX19_03293 0.66 +0.9
640,721 - MPMX19_03293 0.66 -1.5
640,721 - MPMX19_03293 0.66 -1.2
640,888 + MPMX19_03293 0.79 +0.6
640,889 - MPMX19_03293 0.79 +0.5
640,889 - MPMX19_03293 0.79 -1.0
640,978 + MPMX19_03293 0.85 -0.4
640,979 - MPMX19_03293 0.86 +0.2
640,979 - MPMX19_03293 0.86 -0.3
640,979 - MPMX19_03293 0.86 -0.7
640,991 - MPMX19_03293 0.86 +1.2
641,011 + MPMX19_03293 0.88 +1.0
641,011 + MPMX19_03293 0.88 -1.6
641,011 + MPMX19_03293 0.88 -1.2
641,012 - MPMX19_03293 0.88 +0.8
641,012 - MPMX19_03293 0.88 +1.0
641,056 + -1.0
641,056 + -1.2
641,056 + +0.4
641,057 - -1.8
641,057 - -1.0
641,069 - -0.1
641,150 - +0.2
641,150 - -1.2
641,281 + MPMX19_03294 0.10 -0.7
641,281 + MPMX19_03294 0.10 -2.6
641,281 + MPMX19_03294 0.10 +0.4
641,281 + MPMX19_03294 0.10 -1.8
641,281 + MPMX19_03294 0.10 -1.2
641,282 - MPMX19_03294 0.10 -1.6
641,282 - MPMX19_03294 0.10 -0.8
641,282 - MPMX19_03294 0.10 +0.8
641,282 - MPMX19_03294 0.10 -1.0
641,282 - MPMX19_03294 0.10 -0.8
641,282 - MPMX19_03294 0.10 -0.4
641,282 - MPMX19_03294 0.10 -0.0
641,282 - MPMX19_03294 0.10 +0.2
641,282 - MPMX19_03294 0.10 -0.4
641,282 - MPMX19_03294 0.10 -0.5
641,282 - MPMX19_03294 0.10 +0.4
641,407 + MPMX19_03294 0.22 -1.2
641,408 - MPMX19_03294 0.22 +0.7
641,408 - MPMX19_03294 0.22 -1.0
641,464 + MPMX19_03294 0.28 -2.0
641,465 - MPMX19_03294 0.28 +0.4
641,465 - MPMX19_03294 0.28 -0.8
641,465 - MPMX19_03294 0.28 -0.6
641,692 + MPMX19_03294 0.50 +0.8
641,692 + MPMX19_03294 0.50 -0.8
641,692 + MPMX19_03294 0.50 +0.5
641,692 + MPMX19_03294 0.50 -1.3
641,692 + MPMX19_03294 0.50 -0.8
641,693 - MPMX19_03294 0.50 -0.7
641,693 - MPMX19_03294 0.50 -0.3
641,693 - MPMX19_03294 0.50 +0.2
641,693 - MPMX19_03294 0.50 -0.5
641,693 - MPMX19_03294 0.50 -0.9
641,693 - MPMX19_03294 0.50 -1.0
641,693 - MPMX19_03294 0.50 +0.1
641,693 - MPMX19_03294 0.50 -1.4
641,693 - MPMX19_03294 0.50 +1.4
641,693 - MPMX19_03294 0.50 +0.8
641,767 + MPMX19_03294 0.57 +0.4
641,768 - MPMX19_03294 0.57 -1.8
641,768 - MPMX19_03294 0.57 -1.6
641,866 + MPMX19_03294 0.67 +0.2
641,867 - MPMX19_03294 0.67 -0.4
641,867 - MPMX19_03294 0.67 +0.0
641,867 - MPMX19_03294 0.67 +1.1
641,867 - MPMX19_03294 0.67 -1.1
642,052 + MPMX19_03294 0.84 -0.4
642,052 + MPMX19_03294 0.84 -1.7
642,052 + MPMX19_03294 0.84 -1.2
642,052 + MPMX19_03294 0.84 +0.0
642,053 - MPMX19_03294 0.85 -1.6
642,053 - MPMX19_03294 0.85 -0.8
642,053 - MPMX19_03294 0.85 +0.2
642,053 - MPMX19_03294 0.85 -1.7
642,053 - MPMX19_03294 0.85 -1.0
642,053 - MPMX19_03294 0.85 +0.0
642,053 - MPMX19_03294 0.85 +0.2

Or see this region's nucleotide sequence