Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03281

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03279 and MPMX19_03280 are separated by 29 nucleotidesMPMX19_03280 and MPMX19_03281 overlap by 4 nucleotidesMPMX19_03281 and MPMX19_03282 are separated by 39 nucleotidesMPMX19_03282 and MPMX19_03283 are separated by 101 nucleotides MPMX19_03279: MPMX19_03279 - hypothetical protein, at 624,971 to 626,230 _03279 MPMX19_03280: MPMX19_03280 - Inner membrane ABC transporter permease protein YdcV, at 626,260 to 627,075 _03280 MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818 _03281 MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541 _03282 MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956 _03283 Position (kb) 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.099 kb on + strand, within MPMX19_03279at 626.099 kb on + strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.177 kb on + strandat 626.177 kb on + strandat 626.300 kb on - strandat 626.300 kb on - strandat 626.389 kb on + strand, within MPMX19_03280at 626.390 kb on - strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.666 kb on - strand, within MPMX19_03280at 626.666 kb on - strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.771 kb on - strand, within MPMX19_03280at 627.501 kb on + strand, within MPMX19_03281at 627.501 kb on + strand, within MPMX19_03281at 627.501 kb on + strand, within MPMX19_03281at 627.502 kb on - strand, within MPMX19_03281at 627.502 kb on - strand, within MPMX19_03281at 627.738 kb on + strand, within MPMX19_03281at 627.738 kb on + strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.791 kb on + strandat 627.792 kb on - strandat 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.013 kb on - strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.623 kb on - strandat 628.623 kb on - strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.630 kb on - strandat 628.630 kb on - strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.744 kb on - strandat 628.744 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
626,087 + MPMX19_03279 0.89 +0.3
626,087 + MPMX19_03279 0.89 -1.5
626,087 + MPMX19_03279 0.89 -0.3
626,087 + MPMX19_03279 0.89 -1.4
626,087 + MPMX19_03279 0.89 -0.4
626,087 + MPMX19_03279 0.89 -1.0
626,087 + MPMX19_03279 0.89 +1.0
626,087 + MPMX19_03279 0.89 +0.0
626,087 + MPMX19_03279 0.89 -0.7
626,088 - MPMX19_03279 0.89 -1.3
626,088 - MPMX19_03279 0.89 +0.6
626,088 - MPMX19_03279 0.89 -0.7
626,088 - MPMX19_03279 0.89 -2.6
626,088 - MPMX19_03279 0.89 -0.6
626,088 - MPMX19_03279 0.89 -0.1
626,088 - MPMX19_03279 0.89 -0.8
626,088 - MPMX19_03279 0.89 +0.8
626,099 + MPMX19_03279 0.90 +0.0
626,099 + MPMX19_03279 0.90 -1.7
626,100 - MPMX19_03279 0.90 -0.2
626,100 - MPMX19_03279 0.90 -0.5
626,100 - MPMX19_03279 0.90 +0.0
626,102 + MPMX19_03279 0.90 +0.2
626,102 + MPMX19_03279 0.90 -0.6
626,102 + MPMX19_03279 0.90 -0.7
626,102 + MPMX19_03279 0.90 -1.0
626,103 - MPMX19_03279 0.90 -1.0
626,103 - MPMX19_03279 0.90 +1.4
626,103 - MPMX19_03279 0.90 -0.5
626,177 + -0.4
626,177 + -1.4
626,300 - -1.2
626,300 - -1.4
626,389 + MPMX19_03280 0.16 +0.0
626,390 - MPMX19_03280 0.16 -0.7
626,419 + MPMX19_03280 0.19 -0.1
626,419 + MPMX19_03280 0.19 -1.2
626,419 + MPMX19_03280 0.19 -0.6
626,419 + MPMX19_03280 0.19 -1.0
626,420 - MPMX19_03280 0.20 -1.0
626,420 - MPMX19_03280 0.20 +1.6
626,420 - MPMX19_03280 0.20 -1.0
626,420 - MPMX19_03280 0.20 -0.2
626,629 + MPMX19_03280 0.45 -0.5
626,629 + MPMX19_03280 0.45 -1.0
626,629 + MPMX19_03280 0.45 -0.2
626,629 + MPMX19_03280 0.45 -2.1
626,629 + MPMX19_03280 0.45 -0.7
626,629 + MPMX19_03280 0.45 -0.7
626,629 + MPMX19_03280 0.45 +0.5
626,629 + MPMX19_03280 0.45 +0.6
626,630 - MPMX19_03280 0.45 -0.4
626,630 - MPMX19_03280 0.45 -0.9
626,630 - MPMX19_03280 0.45 -1.7
626,630 - MPMX19_03280 0.45 -0.1
626,630 - MPMX19_03280 0.45 -1.5
626,630 - MPMX19_03280 0.45 -1.6
626,665 + MPMX19_03280 0.50 +0.4
626,665 + MPMX19_03280 0.50 -1.2
626,665 + MPMX19_03280 0.50 -0.8
626,665 + MPMX19_03280 0.50 -0.5
626,665 + MPMX19_03280 0.50 +0.1
626,666 - MPMX19_03280 0.50 -2.0
626,666 - MPMX19_03280 0.50 -1.1
626,770 + MPMX19_03280 0.62 +0.2
626,770 + MPMX19_03280 0.62 -2.1
626,770 + MPMX19_03280 0.62 -1.5
626,771 - MPMX19_03280 0.63 -1.5
627,501 + MPMX19_03281 0.57 -0.4
627,501 + MPMX19_03281 0.57 -1.6
627,501 + MPMX19_03281 0.57 -0.7
627,502 - MPMX19_03281 0.58 -0.8
627,502 - MPMX19_03281 0.58 -1.5
627,738 + MPMX19_03281 0.89 -1.0
627,738 + MPMX19_03281 0.89 -0.3
627,739 - MPMX19_03281 0.89 -0.7
627,739 - MPMX19_03281 0.89 -1.0
627,739 - MPMX19_03281 0.89 +0.6
627,791 + -0.8
627,792 - +0.2
628,012 + MPMX19_03282 0.23 +3.6
628,012 + MPMX19_03282 0.23 -2.2
628,012 + MPMX19_03282 0.23 -1.0
628,012 + MPMX19_03282 0.23 -0.3
628,012 + MPMX19_03282 0.23 -1.5
628,013 - MPMX19_03282 0.23 -1.0
628,036 + MPMX19_03282 0.26 +0.2
628,036 + MPMX19_03282 0.26 -1.7
628,036 + MPMX19_03282 0.26 -0.4
628,037 - MPMX19_03282 0.26 +0.6
628,037 - MPMX19_03282 0.26 +0.3
628,037 - MPMX19_03282 0.26 -0.5
628,149 + MPMX19_03282 0.43 +0.3
628,149 + MPMX19_03282 0.43 -0.1
628,149 + MPMX19_03282 0.43 +0.0
628,149 + MPMX19_03282 0.43 +0.0
628,150 - MPMX19_03282 0.43 +0.6
628,150 - MPMX19_03282 0.43 +0.0
628,150 - MPMX19_03282 0.43 -1.6
628,150 - MPMX19_03282 0.43 -1.0
628,150 - MPMX19_03282 0.43 -0.4
628,300 + MPMX19_03282 0.65 -0.1
628,300 + MPMX19_03282 0.65 -1.2
628,495 + -0.2
628,495 + +0.1
628,495 + -0.3
628,495 + +0.6
628,495 + -0.4
628,495 + +0.9
628,495 + +1.6
628,495 + -1.4
628,495 + +0.4
628,496 - -1.2
628,496 - -0.8
628,496 - -0.1
628,496 - -0.4
628,496 - -2.8
628,496 - -1.0
628,496 - -1.4
628,496 - +0.4
628,496 - -0.6
628,496 - -3.0
628,622 + +1.4
628,622 + -0.4
628,622 + +1.0
628,623 - -0.4
628,623 - -0.8
628,624 + -1.4
628,624 + -0.8
628,624 + +1.1
628,629 + +0.2
628,629 + -0.5
628,629 + -0.7
628,629 + -1.4
628,629 + -0.7
628,630 - +0.6
628,630 - -1.2
628,743 + -1.1
628,743 + -1.2
628,743 + -2.3
628,743 + -0.8
628,743 + -0.5
628,744 - -0.2
628,744 - -0.5

Or see this region's nucleotide sequence