Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03273 and MPMX19_03274 are separated by 193 nucleotides MPMX19_03274 and MPMX19_03275 are separated by 159 nucleotides
MPMX19_03273: MPMX19_03273 - Oligosaccharide 4-alpha-D-glucosyltransferase, at 617,399 to 619,753
_03273
MPMX19_03274: MPMX19_03274 - hypothetical protein, at 619,947 to 620,942
_03274
MPMX19_03275: MPMX19_03275 - HTH-type transcriptional regulator PgrR, at 621,102 to 622,043
_03275
Position (kb) 619
620
621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 619.142 kb on + strand, within MPMX19_03273 at 619.142 kb on + strand, within MPMX19_03273 at 619.142 kb on + strand, within MPMX19_03273 at 619.142 kb on + strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.143 kb on - strand, within MPMX19_03273 at 619.148 kb on + strand, within MPMX19_03273 at 619.149 kb on - strand, within MPMX19_03273 at 619.205 kb on + strand, within MPMX19_03273 at 619.343 kb on + strand, within MPMX19_03273 at 619.343 kb on + strand, within MPMX19_03273 at 619.344 kb on - strand, within MPMX19_03273 at 619.508 kb on + strand, within MPMX19_03273 at 619.508 kb on + strand, within MPMX19_03273 at 619.508 kb on + strand, within MPMX19_03273 at 619.508 kb on + strand, within MPMX19_03273 at 619.509 kb on - strand, within MPMX19_03273 at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.656 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.787 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.789 kb on - strand at 619.942 kb on + strand at 619.942 kb on + strand at 619.942 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 619.945 kb on + strand at 620.151 kb on + strand, within MPMX19_03274 at 620.151 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.317 kb on + strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.563 kb on + strand, within MPMX19_03274 at 620.564 kb on - strand, within MPMX19_03274 at 620.788 kb on + strand, within MPMX19_03274 at 620.840 kb on + strand, within MPMX19_03274 at 620.840 kb on + strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.598 kb on - strand, within MPMX19_03275 at 621.612 kb on + strand, within MPMX19_03275 at 621.612 kb on + strand, within MPMX19_03275 at 621.613 kb on - strand, within MPMX19_03275 at 621.613 kb on - strand, within MPMX19_03275
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 619,142 + MPMX19_03273 0.74 -0.2 619,142 + MPMX19_03273 0.74 -0.1 619,142 + MPMX19_03273 0.74 +1.3 619,142 + MPMX19_03273 0.74 +0.4 619,143 - MPMX19_03273 0.74 +0.2 619,143 - MPMX19_03273 0.74 -2.2 619,143 - MPMX19_03273 0.74 -0.2 619,143 - MPMX19_03273 0.74 +1.4 619,143 - MPMX19_03273 0.74 -0.3 619,143 - MPMX19_03273 0.74 -0.8 619,143 - MPMX19_03273 0.74 +0.3 619,143 - MPMX19_03273 0.74 -0.8 619,148 + MPMX19_03273 0.74 +1.1 619,149 - MPMX19_03273 0.74 +0.3 619,205 + MPMX19_03273 0.77 +0.8 619,343 + MPMX19_03273 0.83 +0.8 619,343 + MPMX19_03273 0.83 +0.6 619,344 - MPMX19_03273 0.83 -0.8 619,508 + MPMX19_03273 0.90 -1.2 619,508 + MPMX19_03273 0.90 +0.0 619,508 + MPMX19_03273 0.90 -0.1 619,508 + MPMX19_03273 0.90 +1.0 619,509 - MPMX19_03273 0.90 +0.4 619,541 + +1.1 619,541 + -1.8 619,541 + -0.4 619,541 + +0.7 619,542 - -0.5 619,542 - -0.2 619,542 - -0.8 619,656 - -0.7 619,787 - -0.3 619,787 - +0.3 619,787 - +0.0 619,787 - +0.3 619,787 - -0.7 619,787 - -0.1 619,787 - +0.2 619,787 - -0.0 619,787 - -0.6 619,789 - -0.2 619,789 - -0.9 619,789 - -0.1 619,789 - -0.4 619,789 - -0.7 619,789 - +1.8 619,789 - +0.6 619,789 - -0.1 619,789 - -0.2 619,789 - -0.2 619,789 - +1.6 619,789 - +0.0 619,942 + -0.3 619,942 + -1.0 619,942 + -0.3 619,945 + +0.5 619,945 + -1.0 619,945 + +0.2 619,945 + -1.4 619,945 + -1.1 619,945 + +0.0 619,945 + -1.6 620,151 + MPMX19_03274 0.20 -1.2 620,151 + MPMX19_03274 0.20 -1.2 620,215 + MPMX19_03274 0.27 -0.2 620,215 + MPMX19_03274 0.27 +0.0 620,215 + MPMX19_03274 0.27 -2.5 620,317 + MPMX19_03274 0.37 -0.7 620,318 - MPMX19_03274 0.37 -0.1 620,318 - MPMX19_03274 0.37 -0.8 620,318 - MPMX19_03274 0.37 +0.3 620,563 + MPMX19_03274 0.62 -1.5 620,564 - MPMX19_03274 0.62 -0.8 620,788 + MPMX19_03274 0.84 -0.2 620,840 + MPMX19_03274 0.90 -1.1 620,840 + MPMX19_03274 0.90 -1.7 620,841 - MPMX19_03274 0.90 -1.7 620,841 - MPMX19_03274 0.90 +0.3 620,841 - MPMX19_03274 0.90 -1.0 620,841 - MPMX19_03274 0.90 -1.2 620,841 - MPMX19_03274 0.90 -0.4 620,841 - MPMX19_03274 0.90 -0.7 621,022 + -0.1 621,022 + -2.3 621,022 + -2.7 621,022 + -0.9 621,022 + +2.1 621,022 + -0.2 621,294 + MPMX19_03275 0.20 -1.3 621,294 + MPMX19_03275 0.20 -1.2 621,294 + MPMX19_03275 0.20 -0.4 621,294 + MPMX19_03275 0.20 -0.0 621,294 + MPMX19_03275 0.20 -0.1 621,294 + MPMX19_03275 0.20 -0.7 621,295 - MPMX19_03275 0.20 -0.5 621,295 - MPMX19_03275 0.20 -0.1 621,295 - MPMX19_03275 0.20 +1.6 621,295 - MPMX19_03275 0.20 -0.7 621,597 + MPMX19_03275 0.53 -0.4 621,597 + MPMX19_03275 0.53 -0.7 621,597 + MPMX19_03275 0.53 -0.9 621,598 - MPMX19_03275 0.53 -2.1 621,612 + MPMX19_03275 0.54 +0.8 621,612 + MPMX19_03275 0.54 -1.1 621,613 - MPMX19_03275 0.54 +0.0 621,613 - MPMX19_03275 0.54 -0.4
Or see this region's nucleotide sequence