Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03258

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03257 and MPMX19_03258 are separated by 40 nucleotidesMPMX19_03258 and MPMX19_03259 overlap by 4 nucleotidesMPMX19_03259 and MPMX19_03260 are separated by 31 nucleotides MPMX19_03257: MPMX19_03257 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 598,353 to 599,438 _03257 MPMX19_03258: MPMX19_03258 - Glycine betaine/choline transport system permease protein OusW, at 599,479 to 600,351 _03258 MPMX19_03259: MPMX19_03259 - Glycine betaine transport system permease protein OpuAB, at 600,348 to 601,196 _03259 MPMX19_03260: MPMX19_03260 - HTH-type transcriptional regulator CdhR, at 601,228 to 602,280 _03260 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257at 599.463 kb on + strandat 599.464 kb on - strandat 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.334 kb on + strandat 600.334 kb on + strandat 600.335 kb on - strandat 600.501 kb on + strand, within MPMX19_03259at 600.502 kb on - strand, within MPMX19_03259at 600.556 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.766 kb on - strand, within MPMX19_03259at 600.766 kb on - strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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599,151 + MPMX19_03257 0.73 -1.2
599,151 + MPMX19_03257 0.73 -0.8
599,151 + MPMX19_03257 0.73 -0.2
599,151 + MPMX19_03257 0.73 -0.8
599,152 - MPMX19_03257 0.74 +0.2
599,152 - MPMX19_03257 0.74 +0.0
599,463 + +0.8
599,464 - -1.1
599,608 + MPMX19_03258 0.15 -1.2
599,608 + MPMX19_03258 0.15 -0.2
599,608 + MPMX19_03258 0.15 -1.7
599,608 + MPMX19_03258 0.15 +2.2
599,609 - MPMX19_03258 0.15 +0.0
599,609 - MPMX19_03258 0.15 -2.1
599,609 - MPMX19_03258 0.15 -0.1
599,647 + MPMX19_03258 0.19 -0.2
599,647 + MPMX19_03258 0.19 -0.6
599,647 + MPMX19_03258 0.19 +0.4
599,647 + MPMX19_03258 0.19 -0.2
599,647 + MPMX19_03258 0.19 -1.0
599,648 - MPMX19_03258 0.19 -0.4
599,648 - MPMX19_03258 0.19 -0.2
599,648 - MPMX19_03258 0.19 -0.8
599,648 - MPMX19_03258 0.19 +0.0
599,648 - MPMX19_03258 0.19 -1.0
599,648 - MPMX19_03258 0.19 +0.3
599,905 + MPMX19_03258 0.49 -1.3
599,905 + MPMX19_03258 0.49 -1.1
599,905 + MPMX19_03258 0.49 -2.2
599,905 + MPMX19_03258 0.49 +0.6
599,906 - MPMX19_03258 0.49 -1.0
599,906 - MPMX19_03258 0.49 -0.7
599,906 - MPMX19_03258 0.49 -2.1
599,906 - MPMX19_03258 0.49 +0.3
599,906 - MPMX19_03258 0.49 -1.4
599,906 - MPMX19_03258 0.49 -0.4
599,911 + MPMX19_03258 0.49 -1.8
599,911 + MPMX19_03258 0.49 -1.7
599,911 + MPMX19_03258 0.49 -1.3
599,911 + MPMX19_03258 0.49 -1.2
599,911 + MPMX19_03258 0.49 -2.1
599,911 + MPMX19_03258 0.49 +0.2
599,911 + MPMX19_03258 0.49 +0.5
599,911 + MPMX19_03258 0.49 -1.0
599,911 + MPMX19_03258 0.49 +1.2
599,911 + MPMX19_03258 0.49 +0.6
599,911 + MPMX19_03258 0.49 +0.0
599,911 + MPMX19_03258 0.49 -0.5
599,911 + MPMX19_03258 0.49 +0.7
599,912 - MPMX19_03258 0.50 -0.6
599,912 - MPMX19_03258 0.50 -1.4
599,912 - MPMX19_03258 0.50 -0.9
599,912 - MPMX19_03258 0.50 -0.4
599,912 - MPMX19_03258 0.50 +0.2
599,912 - MPMX19_03258 0.50 -1.2
599,912 - MPMX19_03258 0.50 -1.7
599,912 - MPMX19_03258 0.50 -0.3
599,912 - MPMX19_03258 0.50 -0.4
599,912 - MPMX19_03258 0.50 +0.0
599,912 - MPMX19_03258 0.50 -0.2
599,912 - MPMX19_03258 0.50 +0.1
599,912 - MPMX19_03258 0.50 -1.6
600,211 + MPMX19_03258 0.84 -1.0
600,211 + MPMX19_03258 0.84 +0.5
600,211 + MPMX19_03258 0.84 +0.1
600,211 + MPMX19_03258 0.84 -0.3
600,211 + MPMX19_03258 0.84 -1.6
600,211 + MPMX19_03258 0.84 -1.2
600,211 + MPMX19_03258 0.84 -1.4
600,211 + MPMX19_03258 0.84 +0.3
600,211 + MPMX19_03258 0.84 -1.6
600,212 - MPMX19_03258 0.84 -0.0
600,212 - MPMX19_03258 0.84 -0.0
600,212 - MPMX19_03258 0.84 +0.0
600,212 - MPMX19_03258 0.84 -0.2
600,212 - MPMX19_03258 0.84 +1.8
600,212 - MPMX19_03258 0.84 +0.0
600,212 - MPMX19_03258 0.84 -1.4
600,212 - MPMX19_03258 0.84 -1.1
600,212 - MPMX19_03258 0.84 -1.1
600,212 - MPMX19_03258 0.84 -0.5
600,334 + -1.2
600,334 + -1.4
600,335 - +0.3
600,501 + MPMX19_03259 0.18 -3.1
600,502 - MPMX19_03259 0.18 -0.8
600,556 + MPMX19_03259 0.24 +0.9
600,591 + MPMX19_03259 0.29 +0.3
600,591 + MPMX19_03259 0.29 -0.8
600,591 + MPMX19_03259 0.29 -0.8
600,592 - MPMX19_03259 0.29 -0.4
600,592 - MPMX19_03259 0.29 +0.6
600,592 - MPMX19_03259 0.29 -0.1
600,592 - MPMX19_03259 0.29 +0.6
600,765 + MPMX19_03259 0.49 -1.2
600,765 + MPMX19_03259 0.49 -0.5
600,765 + MPMX19_03259 0.49 +0.5
600,766 - MPMX19_03259 0.49 -0.2
600,766 - MPMX19_03259 0.49 -1.3
600,831 + MPMX19_03259 0.57 -0.7
600,831 + MPMX19_03259 0.57 -1.2
600,831 + MPMX19_03259 0.57 -0.3
600,831 + MPMX19_03259 0.57 +0.8
600,831 + MPMX19_03259 0.57 -1.7
600,832 - MPMX19_03259 0.57 +0.4
600,832 - MPMX19_03259 0.57 -0.6
600,832 - MPMX19_03259 0.57 -1.0
600,832 - MPMX19_03259 0.57 -1.5
600,832 - MPMX19_03259 0.57 -0.7
600,832 - MPMX19_03259 0.57 -2.5
600,832 - MPMX19_03259 0.57 -0.6
600,832 - MPMX19_03259 0.57 -0.5

Or see this region's nucleotide sequence