Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03250 and MPMX19_03251 are separated by 266 nucleotides MPMX19_03251 and MPMX19_03252 are separated by 268 nucleotides MPMX19_03252 and MPMX19_03253 are separated by 2 nucleotides
MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812
_03250
MPMX19_03251: MPMX19_03251 - hypothetical protein, at 592,079 to 592,546
_03251
MPMX19_03252: MPMX19_03252 - hypothetical protein, at 592,815 to 593,522
_03252
MPMX19_03253: MPMX19_03253 - 4-hydroxy-tetrahydrodipicolinate synthase, at 593,525 to 594,436
_03253
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.591 kb on - strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.911 kb on + strand at 591.911 kb on + strand at 591.981 kb on + strand at 591.982 kb on - strand at 591.982 kb on - strand at 591.982 kb on - strand at 591.982 kb on - strand at 592.090 kb on + strand at 592.090 kb on + strand at 592.090 kb on + strand at 592.091 kb on - strand at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.296 kb on - strand, within MPMX19_03251 at 592.792 kb on - strand at 592.839 kb on + strand at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.921 kb on - strand, within MPMX19_03252 at 592.977 kb on + strand, within MPMX19_03252 at 592.978 kb on - strand, within MPMX19_03252 at 593.025 kb on + strand, within MPMX19_03252 at 593.025 kb on + strand, within MPMX19_03252 at 593.026 kb on - strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.270 kb on - strand, within MPMX19_03252 at 593.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 591,307 + MPMX19_03250 0.45 -1.3 591,307 + MPMX19_03250 0.45 -1.0 591,307 + MPMX19_03250 0.45 -0.7 591,307 + MPMX19_03250 0.45 -2.1 591,307 + MPMX19_03250 0.45 -0.5 591,308 - MPMX19_03250 0.46 -1.6 591,308 - MPMX19_03250 0.46 -0.4 591,308 - MPMX19_03250 0.46 -0.1 591,308 - MPMX19_03250 0.46 -0.6 591,591 - MPMX19_03250 0.76 -1.1 591,595 + MPMX19_03250 0.76 -0.4 591,595 + MPMX19_03250 0.76 +0.7 591,595 + MPMX19_03250 0.76 +0.6 591,595 + MPMX19_03250 0.76 +1.4 591,596 - MPMX19_03250 0.77 -0.4 591,596 - MPMX19_03250 0.77 -0.8 591,596 - MPMX19_03250 0.77 -0.6 591,596 - MPMX19_03250 0.77 +0.0 591,596 - MPMX19_03250 0.77 -1.4 591,596 - MPMX19_03250 0.77 +1.0 591,596 - MPMX19_03250 0.77 +0.4 591,911 + -0.6 591,911 + -0.1 591,981 + -1.4 591,982 - -0.1 591,982 - -0.1 591,982 - -1.4 591,982 - -2.2 592,090 + +0.3 592,090 + +1.0 592,090 + -1.4 592,091 - +0.0 592,190 + MPMX19_03251 0.24 -0.5 592,190 + MPMX19_03251 0.24 +0.3 592,190 + MPMX19_03251 0.24 -1.3 592,190 + MPMX19_03251 0.24 -1.2 592,190 + MPMX19_03251 0.24 -1.0 592,190 + MPMX19_03251 0.24 -0.7 592,191 - MPMX19_03251 0.24 -0.2 592,191 - MPMX19_03251 0.24 -0.5 592,191 - MPMX19_03251 0.24 -0.7 592,295 + MPMX19_03251 0.46 -1.6 592,295 + MPMX19_03251 0.46 -0.6 592,295 + MPMX19_03251 0.46 -0.3 592,296 - MPMX19_03251 0.46 -0.5 592,792 - -1.8 592,839 + -0.6 592,920 + MPMX19_03252 0.15 +0.3 592,920 + MPMX19_03252 0.15 -1.6 592,920 + MPMX19_03252 0.15 -1.8 592,920 + MPMX19_03252 0.15 -0.5 592,921 - MPMX19_03252 0.15 -0.1 592,977 + MPMX19_03252 0.23 -0.2 592,978 - MPMX19_03252 0.23 -1.1 593,025 + MPMX19_03252 0.30 -0.8 593,025 + MPMX19_03252 0.30 +0.6 593,026 - MPMX19_03252 0.30 +0.0 593,067 + MPMX19_03252 0.36 -1.2 593,067 + MPMX19_03252 0.36 -1.3 593,067 + MPMX19_03252 0.36 -1.2 593,068 - MPMX19_03252 0.36 +1.8 593,068 - MPMX19_03252 0.36 +0.0 593,068 - MPMX19_03252 0.36 +0.1 593,270 - MPMX19_03252 0.64 -1.1 593,540 - -1.0
Or see this region's nucleotide sequence