Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03182 and MPMX19_03183 are separated by 687 nucleotides MPMX19_03183 and MPMX19_03184 are separated by 98 nucleotides MPMX19_03184 and MPMX19_03185 are separated by 27 nucleotides
MPMX19_03182: MPMX19_03182 - hypothetical protein, at 476,660 to 477,553
_03182
MPMX19_03183: MPMX19_03183 - hypothetical protein, at 478,241 to 478,546
_03183
MPMX19_03184: MPMX19_03184 - hypothetical protein, at 478,645 to 479,001
_03184
MPMX19_03185: MPMX19_03185 - IS3 family transposase ISMdi5, at 479,029 to 479,889
_03185
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.411 kb on - strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.465 kb on + strand at 477.466 kb on - strand at 477.466 kb on - strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.609 kb on - strand at 477.609 kb on - strand at 477.727 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.761 kb on - strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.036 kb on - strand at 478.036 kb on - strand at 478.101 kb on + strand at 478.147 kb on - strand at 478.147 kb on - strand at 478.233 kb on + strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.066 kb on + strand at 479.066 kb on + strand at 479.067 kb on - strand at 479.067 kb on - strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.102 kb on + strand at 479.102 kb on + strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.114 kb on + strand at 479.114 kb on + strand at 479.115 kb on - strand, within MPMX19_03185 at 479.115 kb on - strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.279 kb on + strand, within MPMX19_03185 at 479.280 kb on - strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 477,410 + MPMX19_03182 0.84 -0.9 477,410 + MPMX19_03182 0.84 -0.9 477,410 + MPMX19_03182 0.84 -0.7 477,411 - MPMX19_03182 0.84 -1.2 477,456 + MPMX19_03182 0.89 +0.4 477,456 + MPMX19_03182 0.89 -2.0 477,456 + MPMX19_03182 0.89 +0.1 477,456 + MPMX19_03182 0.89 -0.4 477,457 - MPMX19_03182 0.89 -1.5 477,457 - MPMX19_03182 0.89 -1.5 477,457 - MPMX19_03182 0.89 -0.7 477,457 - MPMX19_03182 0.89 -0.8 477,465 + -1.7 477,466 - -0.8 477,466 - -0.3 477,573 + -1.4 477,573 + -1.0 477,573 + -0.9 477,574 - +0.6 477,574 - -0.5 477,574 - -2.5 477,575 + -0.3 477,575 + -0.4 477,575 + -0.3 477,575 + +0.5 477,575 + -0.2 477,575 + +0.9 477,575 + +0.3 477,575 + -2.1 477,576 - -1.3 477,576 - +1.0 477,576 - -1.5 477,576 - -0.7 477,576 - -1.4 477,576 - -1.0 477,576 - -1.5 477,576 - -0.7 477,576 - -0.2 477,608 + -1.1 477,608 + +0.8 477,608 + -1.0 477,608 + +0.1 477,609 - -1.4 477,609 - -0.2 477,727 + -0.7 477,760 + -0.2 477,760 + -1.4 477,760 + -1.0 477,760 + +0.1 477,761 - -0.2 477,854 + -0.7 477,854 + -1.1 477,854 + -0.1 477,855 - +0.6 477,855 - -0.4 477,855 - -0.7 477,937 + -1.0 477,937 + -1.5 477,937 + -3.1 477,938 - +1.1 477,938 - -0.6 477,938 - -2.2 477,938 - +0.2 478,035 + -1.1 478,035 + -0.5 478,035 + +0.1 478,035 + -0.5 478,036 - -2.0 478,036 - +0.1 478,101 + -1.1 478,147 - -1.5 478,147 - -1.3 478,233 + -0.5 478,234 - -0.8 478,234 - -1.1 478,234 - +0.5 478,234 - -0.5 478,234 - -0.1 478,234 - -2.4 478,234 - -1.1 478,234 - -0.2 478,234 - -0.7 478,254 - +0.5 478,254 - -1.2 478,254 - +0.1 478,254 - -0.4 478,254 - +0.1 478,535 + -0.6 478,535 + +0.5 478,535 + -1.8 478,535 + -0.5 478,535 + +1.6 478,535 + -0.4 478,535 + -0.7 478,535 + -0.7 478,535 + -1.5 478,535 + -0.7 478,536 - +0.8 478,536 - -1.5 478,536 - -1.8 478,536 - -0.1 478,536 - +0.6 478,536 - -0.4 478,536 - +0.1 478,536 - -1.7 478,536 - -0.7 478,536 - -0.2 478,536 - -0.1 478,536 - -1.9 478,536 - -0.5 478,861 + MPMX19_03184 0.61 -0.2 478,861 + MPMX19_03184 0.61 +0.2 478,861 + MPMX19_03184 0.61 -1.0 478,862 - MPMX19_03184 0.61 +0.6 478,862 - MPMX19_03184 0.61 -1.9 478,862 - MPMX19_03184 0.61 -1.2 478,862 - MPMX19_03184 0.61 -1.8 478,862 - MPMX19_03184 0.61 -0.7 478,869 + MPMX19_03184 0.63 +0.5 478,869 + MPMX19_03184 0.63 -0.7 478,869 + MPMX19_03184 0.63 +0.5 478,870 - MPMX19_03184 0.63 -0.9 478,870 - MPMX19_03184 0.63 -1.4 478,870 - MPMX19_03184 0.63 +0.7 478,870 - MPMX19_03184 0.63 -0.4 479,041 + +0.1 479,041 + +0.8 479,041 + -1.8 479,041 + -1.2 479,042 - +1.0 479,042 - -0.7 479,042 - +0.4 479,042 - -0.2 479,042 - -0.7 479,042 - -1.8 479,042 - -0.9 479,042 - +0.9 479,066 + +0.1 479,066 + -0.2 479,067 - -1.1 479,067 - -1.8 479,099 + -1.2 479,099 + -2.1 479,099 + +0.1 479,099 + -0.9 479,100 - +0.8 479,100 - -0.7 479,100 - -0.1 479,100 - -2.1 479,100 - -0.9 479,102 + -0.4 479,102 + -1.7 479,103 - +0.6 479,103 - +0.1 479,103 - -0.4 479,103 - +0.8 479,103 - -1.9 479,103 - -0.3 479,114 + +0.3 479,114 + -0.5 479,115 - MPMX19_03185 0.10 -0.7 479,115 - MPMX19_03185 0.10 -1.4 479,160 + MPMX19_03185 0.15 -1.9 479,160 + MPMX19_03185 0.15 -0.3 479,161 - MPMX19_03185 0.15 +0.4 479,161 - MPMX19_03185 0.15 -0.3 479,161 - MPMX19_03185 0.15 -0.4 479,214 + MPMX19_03185 0.21 -2.5 479,214 + MPMX19_03185 0.21 +0.3 479,214 + MPMX19_03185 0.21 -1.7 479,214 + MPMX19_03185 0.21 -1.5 479,214 + MPMX19_03185 0.21 -0.5 479,214 + MPMX19_03185 0.21 -1.9 479,214 + MPMX19_03185 0.21 -0.7 479,214 + MPMX19_03185 0.21 -0.9 479,214 + MPMX19_03185 0.21 +1.0 479,214 + MPMX19_03185 0.21 -0.0 479,214 + MPMX19_03185 0.21 -0.5 479,214 + MPMX19_03185 0.21 +0.1 479,215 - MPMX19_03185 0.22 +1.6 479,215 - MPMX19_03185 0.22 -0.9 479,215 - MPMX19_03185 0.22 +0.4 479,215 - MPMX19_03185 0.22 -0.7 479,215 - MPMX19_03185 0.22 +0.6 479,215 - MPMX19_03185 0.22 +0.6 479,215 - MPMX19_03185 0.22 -0.1 479,215 - MPMX19_03185 0.22 +0.6 479,215 - MPMX19_03185 0.22 +0.5 479,215 - MPMX19_03185 0.22 -0.9 479,215 - MPMX19_03185 0.22 -1.1 479,219 + MPMX19_03185 0.22 +0.4 479,219 + MPMX19_03185 0.22 -1.6 479,219 + MPMX19_03185 0.22 -0.5 479,219 + MPMX19_03185 0.22 -1.7 479,219 + MPMX19_03185 0.22 -0.2 479,219 + MPMX19_03185 0.22 -0.7 479,220 - MPMX19_03185 0.22 -0.1 479,220 - MPMX19_03185 0.22 -1.4 479,279 + MPMX19_03185 0.29 -1.2 479,280 - MPMX19_03185 0.29 -1.4 479,294 + MPMX19_03185 0.31 -1.4 479,294 + MPMX19_03185 0.31 +0.5 479,294 + MPMX19_03185 0.31 -0.4 479,294 + MPMX19_03185 0.31 -0.1 479,294 + MPMX19_03185 0.31 +0.4 479,295 - MPMX19_03185 0.31 -0.6 479,295 - MPMX19_03185 0.31 -0.3 479,295 - MPMX19_03185 0.31 +0.8 479,295 - MPMX19_03185 0.31 -0.6 479,295 - MPMX19_03185 0.31 +0.3 479,391 + MPMX19_03185 0.42 -0.9 479,391 + MPMX19_03185 0.42 -1.2 479,391 + MPMX19_03185 0.42 -1.8 479,391 + MPMX19_03185 0.42 -0.9 479,391 + MPMX19_03185 0.42 -1.4 479,391 + MPMX19_03185 0.42 -0.5 479,392 - MPMX19_03185 0.42 -1.5 479,392 - MPMX19_03185 0.42 +0.1 479,453 + MPMX19_03185 0.49 -0.0 479,453 + MPMX19_03185 0.49 -1.3 479,453 + MPMX19_03185 0.49 -0.2 479,453 + MPMX19_03185 0.49 -1.5 479,453 + MPMX19_03185 0.49 -0.9 479,453 + MPMX19_03185 0.49 +1.3 479,454 - MPMX19_03185 0.49 +2.0 479,454 - MPMX19_03185 0.49 -1.6 479,454 - MPMX19_03185 0.49 +0.9 479,454 - MPMX19_03185 0.49 -0.1
Or see this region's nucleotide sequence