Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03179 and MPMX19_03180 overlap by 4 nucleotides MPMX19_03180 and MPMX19_03181 overlap by 4 nucleotides MPMX19_03181 and MPMX19_03182 are separated by 81 nucleotides MPMX19_03182 and MPMX19_03183 are separated by 687 nucleotides
MPMX19_03179: MPMX19_03179 - hypothetical protein, at 475,336 to 476,007
_03179
MPMX19_03180: MPMX19_03180 - hypothetical protein, at 476,004 to 476,321
_03180
MPMX19_03181: MPMX19_03181 - hypothetical protein, at 476,318 to 476,578
_03181
MPMX19_03182: MPMX19_03182 - hypothetical protein, at 476,660 to 477,553
_03182
MPMX19_03183: MPMX19_03183 - hypothetical protein, at 478,241 to 478,546
_03183
Position (kb) 476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.743 kb on + strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.744 kb on - strand, within MPMX19_03179 at 475.754 kb on + strand, within MPMX19_03179 at 475.754 kb on + strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.755 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.845 kb on - strand, within MPMX19_03179 at 475.850 kb on + strand, within MPMX19_03179 at 475.850 kb on + strand, within MPMX19_03179 at 475.851 kb on - strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.869 kb on + strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.870 kb on - strand, within MPMX19_03179 at 475.953 kb on + strand at 475.953 kb on + strand at 475.954 kb on - strand at 475.997 kb on + strand at 475.998 kb on - strand at 476.012 kb on + strand at 476.012 kb on + strand at 476.013 kb on - strand at 476.013 kb on - strand at 476.013 kb on - strand at 476.031 kb on - strand at 476.031 kb on - strand at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.176 kb on + strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.177 kb on - strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.180 kb on + strand, within MPMX19_03180 at 476.181 kb on - strand, within MPMX19_03180 at 476.181 kb on - strand, within MPMX19_03180 at 476.213 kb on - strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.281 kb on + strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.282 kb on - strand, within MPMX19_03180 at 476.584 kb on + strand at 476.585 kb on - strand at 476.585 kb on - strand at 477.091 kb on - strand, within MPMX19_03182 at 477.091 kb on - strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.411 kb on - strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.465 kb on + strand at 477.466 kb on - strand at 477.466 kb on - strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.609 kb on - strand at 477.609 kb on - strand at 477.727 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.761 kb on - strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.036 kb on - strand at 478.036 kb on - strand at 478.101 kb on + strand at 478.147 kb on - strand at 478.147 kb on - strand at 478.233 kb on + strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 475,743 + MPMX19_03179 0.61 -1.7 475,743 + MPMX19_03179 0.61 -1.4 475,743 + MPMX19_03179 0.61 -0.2 475,743 + MPMX19_03179 0.61 -0.7 475,743 + MPMX19_03179 0.61 -1.0 475,744 - MPMX19_03179 0.61 +0.8 475,744 - MPMX19_03179 0.61 -0.8 475,744 - MPMX19_03179 0.61 +0.5 475,744 - MPMX19_03179 0.61 -1.0 475,744 - MPMX19_03179 0.61 -0.3 475,754 + MPMX19_03179 0.62 -0.1 475,754 + MPMX19_03179 0.62 -0.4 475,755 - MPMX19_03179 0.62 +2.0 475,755 - MPMX19_03179 0.62 -2.0 475,755 - MPMX19_03179 0.62 +0.2 475,845 - MPMX19_03179 0.76 +1.3 475,845 - MPMX19_03179 0.76 -1.3 475,845 - MPMX19_03179 0.76 -0.6 475,850 + MPMX19_03179 0.76 +0.2 475,850 + MPMX19_03179 0.76 +1.6 475,851 - MPMX19_03179 0.77 -1.5 475,869 + MPMX19_03179 0.79 +0.6 475,869 + MPMX19_03179 0.79 -0.2 475,869 + MPMX19_03179 0.79 +0.0 475,869 + MPMX19_03179 0.79 -1.0 475,869 + MPMX19_03179 0.79 -0.4 475,869 + MPMX19_03179 0.79 +0.5 475,869 + MPMX19_03179 0.79 -0.1 475,869 + MPMX19_03179 0.79 -0.6 475,869 + MPMX19_03179 0.79 -0.4 475,869 + MPMX19_03179 0.79 +0.6 475,869 + MPMX19_03179 0.79 -0.2 475,870 - MPMX19_03179 0.79 +0.5 475,870 - MPMX19_03179 0.79 -1.4 475,870 - MPMX19_03179 0.79 +0.0 475,870 - MPMX19_03179 0.79 -1.4 475,870 - MPMX19_03179 0.79 -0.2 475,870 - MPMX19_03179 0.79 -0.6 475,953 + +0.4 475,953 + +0.1 475,954 - +1.2 475,997 + -0.5 475,998 - -1.0 476,012 + -1.5 476,012 + +0.8 476,013 - -1.7 476,013 - -0.9 476,013 - -1.6 476,031 - -1.1 476,031 - +0.4 476,176 + MPMX19_03180 0.54 +0.2 476,176 + MPMX19_03180 0.54 -0.5 476,176 + MPMX19_03180 0.54 -0.4 476,176 + MPMX19_03180 0.54 +0.6 476,177 - MPMX19_03180 0.54 -2.0 476,177 - MPMX19_03180 0.54 -0.7 476,177 - MPMX19_03180 0.54 -0.1 476,180 + MPMX19_03180 0.55 +0.2 476,180 + MPMX19_03180 0.55 -0.5 476,180 + MPMX19_03180 0.55 +0.0 476,180 + MPMX19_03180 0.55 -1.2 476,181 - MPMX19_03180 0.56 -1.0 476,181 - MPMX19_03180 0.56 -0.4 476,213 - MPMX19_03180 0.66 +0.2 476,281 + MPMX19_03180 0.87 +0.2 476,281 + MPMX19_03180 0.87 -2.3 476,281 + MPMX19_03180 0.87 -1.8 476,281 + MPMX19_03180 0.87 +0.2 476,281 + MPMX19_03180 0.87 +2.0 476,282 - MPMX19_03180 0.87 -1.4 476,282 - MPMX19_03180 0.87 -0.8 476,282 - MPMX19_03180 0.87 -0.5 476,282 - MPMX19_03180 0.87 -0.7 476,282 - MPMX19_03180 0.87 -1.4 476,282 - MPMX19_03180 0.87 -0.4 476,584 + -1.4 476,585 - -0.5 476,585 - -1.4 477,091 - MPMX19_03182 0.48 -0.1 477,091 - MPMX19_03182 0.48 -2.0 477,410 + MPMX19_03182 0.84 -0.9 477,410 + MPMX19_03182 0.84 -0.9 477,410 + MPMX19_03182 0.84 -0.7 477,411 - MPMX19_03182 0.84 -1.2 477,456 + MPMX19_03182 0.89 +0.4 477,456 + MPMX19_03182 0.89 -2.0 477,456 + MPMX19_03182 0.89 +0.1 477,456 + MPMX19_03182 0.89 -0.4 477,457 - MPMX19_03182 0.89 -1.5 477,457 - MPMX19_03182 0.89 -1.5 477,457 - MPMX19_03182 0.89 -0.7 477,457 - MPMX19_03182 0.89 -0.8 477,465 + -1.7 477,466 - -0.8 477,466 - -0.3 477,573 + -1.4 477,573 + -1.0 477,573 + -0.9 477,574 - +0.6 477,574 - -0.5 477,574 - -2.5 477,575 + -0.3 477,575 + -0.4 477,575 + -0.3 477,575 + +0.5 477,575 + -0.2 477,575 + +0.9 477,575 + +0.3 477,575 + -2.1 477,576 - -1.3 477,576 - +1.0 477,576 - -1.5 477,576 - -0.7 477,576 - -1.4 477,576 - -1.0 477,576 - -1.5 477,576 - -0.7 477,576 - -0.2 477,608 + -1.1 477,608 + +0.8 477,608 + -1.0 477,608 + +0.1 477,609 - -1.4 477,609 - -0.2 477,727 + -0.7 477,760 + -0.2 477,760 + -1.4 477,760 + -1.0 477,760 + +0.1 477,761 - -0.2 477,854 + -0.7 477,854 + -1.1 477,854 + -0.1 477,855 - +0.6 477,855 - -0.4 477,855 - -0.7 477,937 + -1.0 477,937 + -1.5 477,937 + -3.1 477,938 - +1.1 477,938 - -0.6 477,938 - -2.2 477,938 - +0.2 478,035 + -1.1 478,035 + -0.5 478,035 + +0.1 478,035 + -0.5 478,036 - -2.0 478,036 - +0.1 478,101 + -1.1 478,147 - -1.5 478,147 - -1.3 478,233 + -0.5 478,234 - -0.8 478,234 - -1.1 478,234 - +0.5 478,234 - -0.5 478,234 - -0.1 478,234 - -2.4 478,234 - -1.1 478,234 - -0.2 478,234 - -0.7 478,254 - +0.5 478,254 - -1.2 478,254 - +0.1 478,254 - -0.4 478,254 - +0.1 478,535 + -0.6 478,535 + +0.5 478,535 + -1.8 478,535 + -0.5 478,535 + +1.6 478,535 + -0.4 478,535 + -0.7 478,535 + -0.7 478,535 + -1.5 478,535 + -0.7 478,536 - +0.8 478,536 - -1.5 478,536 - -1.8 478,536 - -0.1 478,536 - +0.6 478,536 - -0.4 478,536 - +0.1 478,536 - -1.7 478,536 - -0.7 478,536 - -0.2 478,536 - -0.1 478,536 - -1.9 478,536 - -0.5
Or see this region's nucleotide sequence