Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03160 and MPMX19_03161 are separated by 114 nucleotides MPMX19_03161 and MPMX19_03162 are separated by 86 nucleotides MPMX19_03162 and MPMX19_03163 are separated by 93 nucleotides MPMX19_03163 and MPMX19_03164 are separated by 7 nucleotides
MPMX19_03160: MPMX19_03160 - Arsenate reductase, at 452,817 to 453,347
_03160
MPMX19_03161: MPMX19_03161 - Quercetin 2,3-dioxygenase, at 453,462 to 454,160
_03161
MPMX19_03162: MPMX19_03162 - Sensor histidine kinase RcsC, at 454,247 to 455,728
_03162
MPMX19_03163: MPMX19_03163 - hypothetical protein, at 455,822 to 456,502
_03163
MPMX19_03164: MPMX19_03164 - hypothetical protein, at 456,510 to 456,827
_03164
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.328 kb on + strand at 453.328 kb on + strand at 453.328 kb on + strand at 453.329 kb on - strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.772 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.850 kb on + strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.851 kb on - strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.961 kb on + strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 453.962 kb on - strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.058 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.075 kb on + strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.076 kb on - strand, within MPMX19_03161 at 454.248 kb on + strand at 454.494 kb on + strand, within MPMX19_03162 at 454.494 kb on + strand, within MPMX19_03162 at 454.494 kb on + strand, within MPMX19_03162 at 454.495 kb on - strand, within MPMX19_03162 at 454.495 kb on - strand, within MPMX19_03162 at 454.495 kb on - strand, within MPMX19_03162 at 454.495 kb on - strand, within MPMX19_03162 at 454.558 kb on + strand, within MPMX19_03162 at 454.558 kb on + strand, within MPMX19_03162 at 454.558 kb on + strand, within MPMX19_03162 at 454.558 kb on + strand, within MPMX19_03162 at 454.559 kb on - strand, within MPMX19_03162 at 454.560 kb on + strand, within MPMX19_03162 at 454.560 kb on + strand, within MPMX19_03162 at 454.560 kb on + strand, within MPMX19_03162 at 454.561 kb on - strand, within MPMX19_03162 at 454.561 kb on - strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.203 kb on - strand, within MPMX19_03162 at 455.203 kb on - strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.333 kb on - strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.824 kb on - strand at 455.824 kb on - strand at 455.824 kb on - strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.914 kb on - strand, within MPMX19_03163 at 455.973 kb on + strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 456.096 kb on + strand, within MPMX19_03163 at 456.096 kb on + strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.235 kb on + strand, within MPMX19_03163 at 456.235 kb on + strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.468 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.607 kb on - strand, within MPMX19_03164 at 456.607 kb on - strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 453,328 + +0.1 453,328 + -2.5 453,328 + -0.1 453,329 - -0.2 453,444 + +0.5 453,444 + -0.2 453,444 + -1.4 453,444 + +0.4 453,445 - +0.2 453,445 - -0.8 453,445 - -1.1 453,445 - +0.5 453,445 - -0.2 453,445 - -1.2 453,445 - +0.4 453,463 + +0.2 453,463 + +0.0 453,463 + -1.7 453,463 + +1.4 453,463 + -0.6 453,463 + +0.0 453,464 - +0.1 453,464 - -0.1 453,464 - +0.6 453,464 - +0.4 453,464 - -1.4 453,464 - +0.8 453,464 - -1.1 453,664 + MPMX19_03161 0.29 -0.7 453,664 + MPMX19_03161 0.29 +0.4 453,664 + MPMX19_03161 0.29 -0.6 453,665 - MPMX19_03161 0.29 -1.5 453,665 - MPMX19_03161 0.29 +0.4 453,665 - MPMX19_03161 0.29 +0.8 453,665 - MPMX19_03161 0.29 +0.3 453,772 + MPMX19_03161 0.44 +0.1 453,850 + MPMX19_03161 0.56 +0.1 453,850 + MPMX19_03161 0.56 -1.8 453,850 + MPMX19_03161 0.56 +0.3 453,850 + MPMX19_03161 0.56 -0.7 453,850 + MPMX19_03161 0.56 -0.4 453,851 - MPMX19_03161 0.56 -0.4 453,851 - MPMX19_03161 0.56 -1.4 453,851 - MPMX19_03161 0.56 -1.4 453,851 - MPMX19_03161 0.56 -1.7 453,851 - MPMX19_03161 0.56 -1.5 453,851 - MPMX19_03161 0.56 -0.4 453,851 - MPMX19_03161 0.56 -1.9 453,961 + MPMX19_03161 0.71 -0.4 453,961 + MPMX19_03161 0.71 +2.2 453,961 + MPMX19_03161 0.71 -0.9 453,961 + MPMX19_03161 0.71 -0.2 453,961 + MPMX19_03161 0.71 -0.5 453,961 + MPMX19_03161 0.71 -0.9 453,962 - MPMX19_03161 0.72 -0.9 453,962 - MPMX19_03161 0.72 +0.5 453,962 - MPMX19_03161 0.72 -0.4 453,962 - MPMX19_03161 0.72 -0.3 453,962 - MPMX19_03161 0.72 -2.5 453,962 - MPMX19_03161 0.72 -0.6 453,962 - MPMX19_03161 0.72 -0.7 453,962 - MPMX19_03161 0.72 -1.2 453,962 - MPMX19_03161 0.72 +0.8 454,058 + MPMX19_03161 0.85 -0.2 454,058 + MPMX19_03161 0.85 -0.8 454,058 + MPMX19_03161 0.85 -0.3 454,075 + MPMX19_03161 0.88 -1.4 454,075 + MPMX19_03161 0.88 -0.8 454,075 + MPMX19_03161 0.88 -2.3 454,075 + MPMX19_03161 0.88 +0.9 454,075 + MPMX19_03161 0.88 -0.4 454,076 - MPMX19_03161 0.88 -0.4 454,076 - MPMX19_03161 0.88 -1.7 454,076 - MPMX19_03161 0.88 +1.6 454,076 - MPMX19_03161 0.88 -0.4 454,248 + -1.2 454,494 + MPMX19_03162 0.17 -0.7 454,494 + MPMX19_03162 0.17 -1.5 454,494 + MPMX19_03162 0.17 -2.0 454,495 - MPMX19_03162 0.17 -0.5 454,495 - MPMX19_03162 0.17 +0.3 454,495 - MPMX19_03162 0.17 +0.1 454,495 - MPMX19_03162 0.17 +0.2 454,558 + MPMX19_03162 0.21 -0.7 454,558 + MPMX19_03162 0.21 +0.4 454,558 + MPMX19_03162 0.21 -0.2 454,558 + MPMX19_03162 0.21 +1.1 454,559 - MPMX19_03162 0.21 -1.2 454,560 + MPMX19_03162 0.21 -0.9 454,560 + MPMX19_03162 0.21 -1.9 454,560 + MPMX19_03162 0.21 -1.5 454,561 - MPMX19_03162 0.21 -0.9 454,561 - MPMX19_03162 0.21 +0.6 455,202 + MPMX19_03162 0.64 +1.6 455,202 + MPMX19_03162 0.64 +0.2 455,202 + MPMX19_03162 0.64 -0.0 455,202 + MPMX19_03162 0.64 -0.9 455,203 - MPMX19_03162 0.65 -0.4 455,203 - MPMX19_03162 0.65 -1.2 455,332 + MPMX19_03162 0.73 +0.1 455,332 + MPMX19_03162 0.73 +0.6 455,332 + MPMX19_03162 0.73 -2.2 455,332 + MPMX19_03162 0.73 +0.1 455,333 - MPMX19_03162 0.73 +0.5 455,373 + MPMX19_03162 0.76 +0.3 455,373 + MPMX19_03162 0.76 -0.2 455,373 + MPMX19_03162 0.76 +0.2 455,374 - MPMX19_03162 0.76 -1.2 455,374 - MPMX19_03162 0.76 -0.4 455,374 - MPMX19_03162 0.76 -1.2 455,374 - MPMX19_03162 0.76 -0.1 455,374 - MPMX19_03162 0.76 -0.7 455,823 + -1.1 455,823 + -0.4 455,823 + -0.9 455,823 + +0.6 455,823 + +0.6 455,823 + +0.3 455,824 - -0.6 455,824 - -0.3 455,824 - -1.4 455,864 + +0.3 455,864 + -0.5 455,864 + -2.5 455,864 + +0.3 455,864 + -1.1 455,864 + +0.1 455,864 + +0.5 455,864 + -0.4 455,864 + +0.1 455,865 - -1.1 455,865 - +0.8 455,865 - -0.7 455,865 - -0.5 455,865 - -0.8 455,865 - +0.5 455,865 - -0.4 455,914 - MPMX19_03163 0.14 -0.2 455,973 + MPMX19_03163 0.22 -1.4 455,974 - MPMX19_03163 0.22 -1.6 455,974 - MPMX19_03163 0.22 +0.2 455,974 - MPMX19_03163 0.22 -0.0 456,096 + MPMX19_03163 0.40 -0.4 456,096 + MPMX19_03163 0.40 +0.0 456,097 - MPMX19_03163 0.40 -1.4 456,097 - MPMX19_03163 0.40 -1.0 456,097 - MPMX19_03163 0.40 -2.2 456,097 - MPMX19_03163 0.40 -0.4 456,097 - MPMX19_03163 0.40 +0.2 456,097 - MPMX19_03163 0.40 -1.7 456,097 - MPMX19_03163 0.40 -1.5 456,097 - MPMX19_03163 0.40 -1.2 456,228 + MPMX19_03163 0.60 -1.9 456,228 + MPMX19_03163 0.60 -1.2 456,228 + MPMX19_03163 0.60 +1.1 456,228 + MPMX19_03163 0.60 +1.1 456,228 + MPMX19_03163 0.60 -0.1 456,228 + MPMX19_03163 0.60 +0.5 456,228 + MPMX19_03163 0.60 -0.4 456,228 + MPMX19_03163 0.60 +0.1 456,228 + MPMX19_03163 0.60 +0.1 456,228 + MPMX19_03163 0.60 -1.2 456,229 - MPMX19_03163 0.60 +1.1 456,229 - MPMX19_03163 0.60 -0.2 456,229 - MPMX19_03163 0.60 -0.5 456,229 - MPMX19_03163 0.60 -0.4 456,229 - MPMX19_03163 0.60 -0.7 456,229 - MPMX19_03163 0.60 +0.3 456,229 - MPMX19_03163 0.60 +0.5 456,229 - MPMX19_03163 0.60 -0.1 456,229 - MPMX19_03163 0.60 -0.8 456,229 - MPMX19_03163 0.60 -0.1 456,235 + MPMX19_03163 0.61 -0.4 456,235 + MPMX19_03163 0.61 -0.1 456,236 - MPMX19_03163 0.61 +0.7 456,236 - MPMX19_03163 0.61 -1.3 456,236 - MPMX19_03163 0.61 +0.6 456,468 + -0.2 456,507 + -0.9 456,507 + -2.5 456,507 + -2.3 456,507 + +2.1 456,507 + -0.7 456,507 + -0.5 456,507 + +0.6 456,508 - +0.1 456,508 - -0.9 456,508 - +0.1 456,508 - -1.5 456,607 - MPMX19_03164 0.31 -0.2 456,607 - MPMX19_03164 0.31 +0.3 456,723 + MPMX19_03164 0.67 -0.8 456,723 + MPMX19_03164 0.67 +0.9 456,723 + MPMX19_03164 0.67 -0.4 456,723 + MPMX19_03164 0.67 +0.3 456,723 + MPMX19_03164 0.67 +0.2 456,723 + MPMX19_03164 0.67 -1.8 456,723 + MPMX19_03164 0.67 -0.2 456,723 + MPMX19_03164 0.67 -0.5 456,723 + MPMX19_03164 0.67 -1.4 456,723 + MPMX19_03164 0.67 -0.9 456,723 + MPMX19_03164 0.67 -1.2 456,723 + MPMX19_03164 0.67 -0.9 456,724 - MPMX19_03164 0.67 +0.6 456,724 - MPMX19_03164 0.67 -0.2 456,724 - MPMX19_03164 0.67 -0.2 456,724 - MPMX19_03164 0.67 +0.1 456,724 - MPMX19_03164 0.67 -0.4 456,724 - MPMX19_03164 0.67 -0.2
Or see this region's nucleotide sequence