Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03133

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03132 and MPMX19_03133 are separated by 32 nucleotidesMPMX19_03133 and MPMX19_03134 are separated by 80 nucleotides MPMX19_03132: MPMX19_03132 - 3-keto-5-aminohexanoate cleavage enzyme, at 420,589 to 421,527 _03132 MPMX19_03133: MPMX19_03133 - D-beta-hydroxybutyrate dehydrogenase, at 421,560 to 422,354 _03133 MPMX19_03134: MPMX19_03134 - hypothetical protein, at 422,435 to 423,649 _03134 Position (kb) 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 420.971 kb on - strand, within MPMX19_03132at 421.003 kb on + strand, within MPMX19_03132at 421.004 kb on - strand, within MPMX19_03132at 421.004 kb on - strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.059 kb on + strand, within MPMX19_03132at 421.060 kb on - strand, within MPMX19_03132at 421.060 kb on - strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.746 kb on + strand, within MPMX19_03133at 421.746 kb on + strand, within MPMX19_03133at 421.746 kb on + strand, within MPMX19_03133at 421.746 kb on + strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.747 kb on - strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.828 kb on + strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 421.829 kb on - strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.034 kb on + strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.035 kb on - strand, within MPMX19_03133at 422.340 kb on + strandat 422.340 kb on + strandat 422.341 kb on - strandat 422.341 kb on - strandat 422.341 kb on - strandat 422.341 kb on - strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.342 kb on + strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.343 kb on - strandat 422.440 kb on + strandat 422.440 kb on + strandat 422.440 kb on + strandat 422.441 kb on - strandat 422.441 kb on - strandat 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.564 kb on + strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.565 kb on - strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.963 kb on + strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 422.964 kb on - strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.074 kb on + strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.075 kb on - strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.278 kb on + strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134at 423.279 kb on - strand, within MPMX19_03134

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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420,971 - MPMX19_03132 0.41 +0.4
421,003 + MPMX19_03132 0.44 -1.7
421,004 - MPMX19_03132 0.44 -0.1
421,004 - MPMX19_03132 0.44 -1.2
421,057 + MPMX19_03132 0.50 -0.3
421,057 + MPMX19_03132 0.50 -0.9
421,057 + MPMX19_03132 0.50 -0.2
421,057 + MPMX19_03132 0.50 -0.9
421,057 + MPMX19_03132 0.50 -1.5
421,057 + MPMX19_03132 0.50 +0.9
421,057 + MPMX19_03132 0.50 -0.4
421,058 - MPMX19_03132 0.50 -0.9
421,058 - MPMX19_03132 0.50 -0.4
421,058 - MPMX19_03132 0.50 -0.2
421,058 - MPMX19_03132 0.50 -0.2
421,058 - MPMX19_03132 0.50 -0.1
421,059 + MPMX19_03132 0.50 +0.1
421,060 - MPMX19_03132 0.50 +1.6
421,060 - MPMX19_03132 0.50 +0.7
421,111 + MPMX19_03132 0.56 -1.5
421,111 + MPMX19_03132 0.56 -0.7
421,111 + MPMX19_03132 0.56 +1.1
421,111 + MPMX19_03132 0.56 -1.4
421,111 + MPMX19_03132 0.56 -0.1
421,111 + MPMX19_03132 0.56 -0.4
421,111 + MPMX19_03132 0.56 -0.5
421,112 - MPMX19_03132 0.56 -0.8
421,112 - MPMX19_03132 0.56 +0.1
421,112 - MPMX19_03132 0.56 -0.7
421,112 - MPMX19_03132 0.56 -2.6
421,112 - MPMX19_03132 0.56 -0.4
421,112 - MPMX19_03132 0.56 -0.7
421,112 - MPMX19_03132 0.56 -1.0
421,112 - MPMX19_03132 0.56 -1.2
421,112 - MPMX19_03132 0.56 -0.7
421,112 - MPMX19_03132 0.56 -1.1
421,129 + MPMX19_03132 0.58 -0.1
421,129 + MPMX19_03132 0.58 +0.5
421,129 + MPMX19_03132 0.58 -0.1
421,129 + MPMX19_03132 0.58 -0.5
421,130 - MPMX19_03132 0.58 -0.4
421,130 - MPMX19_03132 0.58 -0.6
421,130 - MPMX19_03132 0.58 -1.2
421,130 - MPMX19_03132 0.58 +0.1
421,130 - MPMX19_03132 0.58 +0.2
421,130 - MPMX19_03132 0.58 -1.8
421,130 - MPMX19_03132 0.58 -1.9
421,276 + MPMX19_03132 0.73 +0.5
421,276 + MPMX19_03132 0.73 -0.7
421,276 + MPMX19_03132 0.73 +0.4
421,276 + MPMX19_03132 0.73 -1.7
421,277 - MPMX19_03132 0.73 +0.1
421,277 - MPMX19_03132 0.73 -0.2
421,277 - MPMX19_03132 0.73 +0.6
421,277 - MPMX19_03132 0.73 -0.5
421,277 - MPMX19_03132 0.73 -0.5
421,277 - MPMX19_03132 0.73 +0.2
421,277 - MPMX19_03132 0.73 +0.1
421,277 - MPMX19_03132 0.73 -2.2
421,378 + MPMX19_03132 0.84 -0.2
421,378 + MPMX19_03132 0.84 -0.2
421,378 + MPMX19_03132 0.84 +0.4
421,378 + MPMX19_03132 0.84 -0.2
421,378 + MPMX19_03132 0.84 +1.0
421,379 - MPMX19_03132 0.84 -0.4
421,379 - MPMX19_03132 0.84 +0.7
421,379 - MPMX19_03132 0.84 +0.6
421,379 - MPMX19_03132 0.84 +0.1
421,379 - MPMX19_03132 0.84 +0.1
421,746 + MPMX19_03133 0.23 -0.9
421,746 + MPMX19_03133 0.23 -0.5
421,746 + MPMX19_03133 0.23 +0.6
421,746 + MPMX19_03133 0.23 -1.4
421,747 - MPMX19_03133 0.24 -1.9
421,747 - MPMX19_03133 0.24 -0.2
421,747 - MPMX19_03133 0.24 +0.2
421,747 - MPMX19_03133 0.24 -0.9
421,747 - MPMX19_03133 0.24 -1.4
421,747 - MPMX19_03133 0.24 -1.7
421,747 - MPMX19_03133 0.24 -0.8
421,828 + MPMX19_03133 0.34 -0.9
421,828 + MPMX19_03133 0.34 -0.6
421,828 + MPMX19_03133 0.34 +0.4
421,828 + MPMX19_03133 0.34 +0.3
421,828 + MPMX19_03133 0.34 -1.4
421,828 + MPMX19_03133 0.34 -0.9
421,828 + MPMX19_03133 0.34 +0.6
421,828 + MPMX19_03133 0.34 -0.8
421,828 + MPMX19_03133 0.34 +0.3
421,829 - MPMX19_03133 0.34 -0.4
421,829 - MPMX19_03133 0.34 +2.1
421,829 - MPMX19_03133 0.34 +1.6
421,829 - MPMX19_03133 0.34 -1.4
421,829 - MPMX19_03133 0.34 +0.6
421,829 - MPMX19_03133 0.34 -1.5
421,829 - MPMX19_03133 0.34 -1.3
421,829 - MPMX19_03133 0.34 -0.8
421,829 - MPMX19_03133 0.34 -1.9
421,829 - MPMX19_03133 0.34 +0.4
421,829 - MPMX19_03133 0.34 -0.7
422,034 + MPMX19_03133 0.60 +2.2
422,034 + MPMX19_03133 0.60 -1.5
422,034 + MPMX19_03133 0.60 -0.2
422,034 + MPMX19_03133 0.60 +0.2
422,034 + MPMX19_03133 0.60 -0.2
422,034 + MPMX19_03133 0.60 -1.5
422,034 + MPMX19_03133 0.60 -0.1
422,034 + MPMX19_03133 0.60 -0.9
422,034 + MPMX19_03133 0.60 +0.6
422,034 + MPMX19_03133 0.60 -0.8
422,034 + MPMX19_03133 0.60 +0.2
422,034 + MPMX19_03133 0.60 -0.5
422,035 - MPMX19_03133 0.60 -0.3
422,035 - MPMX19_03133 0.60 -0.7
422,035 - MPMX19_03133 0.60 +0.1
422,035 - MPMX19_03133 0.60 -0.6
422,035 - MPMX19_03133 0.60 -1.8
422,035 - MPMX19_03133 0.60 -1.8
422,035 - MPMX19_03133 0.60 -1.3
422,035 - MPMX19_03133 0.60 -1.6
422,340 + -0.8
422,340 + -1.7
422,341 - -1.7
422,341 - -1.5
422,341 - -0.9
422,341 - +0.4
422,342 + +0.3
422,342 + -0.9
422,342 + -0.4
422,342 + -2.6
422,342 + -0.6
422,342 + -1.2
422,342 + -0.9
422,342 + -1.4
422,342 + -0.6
422,342 + -0.8
422,342 + -0.8
422,342 + -1.2
422,342 + +0.9
422,342 + -0.4
422,342 + -0.7
422,342 + -0.6
422,342 + +0.2
422,342 + +0.2
422,342 + -0.1
422,342 + -0.4
422,342 + -1.5
422,343 - -0.0
422,343 - -0.2
422,343 - -1.4
422,343 - +0.1
422,343 - +0.1
422,343 - +0.4
422,343 - -0.8
422,343 - +0.2
422,343 - +0.6
422,343 - -0.5
422,343 - -0.7
422,343 - -0.9
422,343 - -0.8
422,343 - -0.5
422,343 - -0.2
422,343 - -0.7
422,440 + -0.5
422,440 + -2.0
422,440 + -1.3
422,441 - -1.3
422,441 - +1.2
422,564 + MPMX19_03134 0.11 -0.7
422,564 + MPMX19_03134 0.11 -1.2
422,564 + MPMX19_03134 0.11 -0.2
422,564 + MPMX19_03134 0.11 +1.1
422,564 + MPMX19_03134 0.11 -1.0
422,564 + MPMX19_03134 0.11 -1.2
422,564 + MPMX19_03134 0.11 -0.8
422,564 + MPMX19_03134 0.11 +0.2
422,564 + MPMX19_03134 0.11 +0.2
422,565 - MPMX19_03134 0.11 -0.1
422,565 - MPMX19_03134 0.11 -0.1
422,565 - MPMX19_03134 0.11 -0.9
422,565 - MPMX19_03134 0.11 -1.3
422,565 - MPMX19_03134 0.11 -0.0
422,565 - MPMX19_03134 0.11 +0.8
422,565 - MPMX19_03134 0.11 -0.9
422,565 - MPMX19_03134 0.11 -0.1
422,565 - MPMX19_03134 0.11 -0.8
422,565 - MPMX19_03134 0.11 -0.6
422,963 + MPMX19_03134 0.43 -0.5
422,963 + MPMX19_03134 0.43 -0.4
422,963 + MPMX19_03134 0.43 +0.4
422,963 + MPMX19_03134 0.43 -0.7
422,964 - MPMX19_03134 0.44 -0.2
422,964 - MPMX19_03134 0.44 +0.2
422,964 - MPMX19_03134 0.44 -0.8
423,074 + MPMX19_03134 0.53 +0.1
423,074 + MPMX19_03134 0.53 -2.8
423,074 + MPMX19_03134 0.53 -2.9
423,074 + MPMX19_03134 0.53 -0.9
423,074 + MPMX19_03134 0.53 +0.4
423,074 + MPMX19_03134 0.53 -1.4
423,075 - MPMX19_03134 0.53 -2.4
423,075 - MPMX19_03134 0.53 -0.2
423,075 - MPMX19_03134 0.53 -0.9
423,075 - MPMX19_03134 0.53 -0.9
423,075 - MPMX19_03134 0.53 -0.8
423,075 - MPMX19_03134 0.53 -0.7
423,075 - MPMX19_03134 0.53 +0.1
423,075 - MPMX19_03134 0.53 -0.1
423,075 - MPMX19_03134 0.53 -0.5
423,075 - MPMX19_03134 0.53 -0.9
423,278 + MPMX19_03134 0.69 -0.5
423,278 + MPMX19_03134 0.69 -1.9
423,278 + MPMX19_03134 0.69 -2.1
423,278 + MPMX19_03134 0.69 +0.1
423,278 + MPMX19_03134 0.69 -0.5
423,278 + MPMX19_03134 0.69 -0.2
423,279 - MPMX19_03134 0.69 +0.1
423,279 - MPMX19_03134 0.69 -0.9
423,279 - MPMX19_03134 0.69 -0.6
423,279 - MPMX19_03134 0.69 -0.5
423,279 - MPMX19_03134 0.69 +0.1
423,279 - MPMX19_03134 0.69 -0.2

Or see this region's nucleotide sequence