Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03123

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03122 and MPMX19_03123 are separated by 59 nucleotidesMPMX19_03123 and MPMX19_03124 overlap by 4 nucleotidesMPMX19_03124 and MPMX19_03125 are separated by 16 nucleotides MPMX19_03122: MPMX19_03122 - [Citrate [pro-3S]-lyase] ligase, at 410,045 to 411,163 _03122 MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519 _03123 MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388 _03124 MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907 _03125 Position (kb) 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.303 kb on + strand, within MPMX19_03122at 410.303 kb on + strand, within MPMX19_03122at 410.304 kb on - strand, within MPMX19_03122at 410.304 kb on - strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.402 kb on + strand, within MPMX19_03122at 410.403 kb on - strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.445 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.474 kb on + strandat 412.474 kb on + strandat 412.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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410,303 + MPMX19_03122 0.23 +0.1
410,303 + MPMX19_03122 0.23 +1.1
410,304 - MPMX19_03122 0.23 -1.3
410,304 - MPMX19_03122 0.23 -1.0
410,333 + MPMX19_03122 0.26 -0.5
410,333 + MPMX19_03122 0.26 -0.7
410,333 + MPMX19_03122 0.26 -0.7
410,334 - MPMX19_03122 0.26 -0.2
410,334 - MPMX19_03122 0.26 -1.5
410,334 - MPMX19_03122 0.26 -0.8
410,378 + MPMX19_03122 0.30 -1.0
410,378 + MPMX19_03122 0.30 +0.2
410,378 + MPMX19_03122 0.30 +1.1
410,378 + MPMX19_03122 0.30 -1.0
410,378 + MPMX19_03122 0.30 -1.7
410,378 + MPMX19_03122 0.30 -0.5
410,378 + MPMX19_03122 0.30 +0.3
410,378 + MPMX19_03122 0.30 +0.7
410,378 + MPMX19_03122 0.30 -0.8
410,378 + MPMX19_03122 0.30 +0.0
410,378 + MPMX19_03122 0.30 +0.2
410,379 - MPMX19_03122 0.30 -2.6
410,379 - MPMX19_03122 0.30 -0.8
410,379 - MPMX19_03122 0.30 -1.1
410,379 - MPMX19_03122 0.30 -0.9
410,379 - MPMX19_03122 0.30 +1.0
410,379 - MPMX19_03122 0.30 -0.8
410,402 + MPMX19_03122 0.32 +0.7
410,403 - MPMX19_03122 0.32 +0.1
410,444 + MPMX19_03122 0.36 -0.2
410,444 + MPMX19_03122 0.36 +1.0
410,444 + MPMX19_03122 0.36 -2.7
410,445 - MPMX19_03122 0.36 +1.3
410,547 - MPMX19_03122 0.45 -1.3
410,547 - MPMX19_03122 0.45 +0.3
410,547 - MPMX19_03122 0.45 -1.0
410,547 - MPMX19_03122 0.45 +1.2
410,699 + MPMX19_03122 0.58 +0.4
410,699 + MPMX19_03122 0.58 -1.2
410,699 + MPMX19_03122 0.58 -1.1
410,699 + MPMX19_03122 0.58 -1.3
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -0.1
410,699 + MPMX19_03122 0.58 -0.2
410,699 + MPMX19_03122 0.58 +0.0
410,699 + MPMX19_03122 0.58 -1.1
410,699 + MPMX19_03122 0.58 -0.1
410,699 + MPMX19_03122 0.58 -3.3
410,699 + MPMX19_03122 0.58 -0.7
410,699 + MPMX19_03122 0.58 +0.3
410,699 + MPMX19_03122 0.58 +0.9
410,699 + MPMX19_03122 0.58 -2.0
410,699 + MPMX19_03122 0.58 +1.1
410,699 + MPMX19_03122 0.58 +0.4
410,699 + MPMX19_03122 0.58 +0.2
410,699 + MPMX19_03122 0.58 -0.1
410,699 + MPMX19_03122 0.58 +0.2
410,699 + MPMX19_03122 0.58 +0.2
410,699 + MPMX19_03122 0.58 -1.8
410,699 + MPMX19_03122 0.58 -0.9
410,699 + MPMX19_03122 0.58 -0.9
410,699 + MPMX19_03122 0.58 -0.3
410,700 - MPMX19_03122 0.59 +0.4
410,700 - MPMX19_03122 0.59 -0.6
410,700 - MPMX19_03122 0.59 -0.1
410,700 - MPMX19_03122 0.59 -1.8
410,700 - MPMX19_03122 0.59 +0.3
410,700 - MPMX19_03122 0.59 +0.2
410,700 - MPMX19_03122 0.59 +0.5
410,700 - MPMX19_03122 0.59 -0.2
410,700 - MPMX19_03122 0.59 -1.0
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 +0.9
410,700 - MPMX19_03122 0.59 -1.1
410,700 - MPMX19_03122 0.59 -0.3
410,700 - MPMX19_03122 0.59 -0.5
410,700 - MPMX19_03122 0.59 -1.8
410,700 - MPMX19_03122 0.59 -0.9
410,700 - MPMX19_03122 0.59 -1.6
410,700 - MPMX19_03122 0.59 -1.8
410,700 - MPMX19_03122 0.59 -0.9
410,700 - MPMX19_03122 0.59 -1.7
410,700 - MPMX19_03122 0.59 +0.6
410,700 - MPMX19_03122 0.59 +0.8
410,700 - MPMX19_03122 0.59 +0.3
410,729 + MPMX19_03122 0.61 -0.1
410,729 + MPMX19_03122 0.61 +0.5
410,730 - MPMX19_03122 0.61 -0.1
410,730 - MPMX19_03122 0.61 +0.1
410,730 - MPMX19_03122 0.61 +0.2
410,870 + MPMX19_03122 0.74 +0.7
410,870 + MPMX19_03122 0.74 -0.3
410,871 - MPMX19_03122 0.74 -0.7
410,871 - MPMX19_03122 0.74 -0.1
411,068 + -0.9
411,068 + -0.4
411,068 + -0.4
411,068 + -1.9
411,068 + -1.0
411,068 + -0.8
411,068 + -0.2
411,068 + +0.9
411,068 + +0.3
411,068 + -0.0
411,069 - -0.4
411,069 - -0.4
411,069 - -1.2
411,069 - -0.1
411,069 - +0.2
411,284 + MPMX19_03123 0.21 +0.8
411,284 + MPMX19_03123 0.21 -0.2
411,284 + MPMX19_03123 0.21 -0.7
411,285 - MPMX19_03123 0.21 +0.2
411,285 - MPMX19_03123 0.21 +0.5
411,585 + +0.3
411,585 + +0.2
411,585 + +0.9
411,585 + -0.9
411,585 + -0.2
411,585 + -0.9
411,585 + -0.0
411,586 - -0.0
411,586 - -0.9
411,586 - -2.0
411,586 - -0.1
411,984 + MPMX19_03124 0.54 -1.8
411,984 + MPMX19_03124 0.54 -2.1
411,984 + MPMX19_03124 0.54 -0.5
411,984 + MPMX19_03124 0.54 +0.3
411,984 + MPMX19_03124 0.54 -0.9
411,984 + MPMX19_03124 0.54 +0.6
411,984 + MPMX19_03124 0.54 +1.4
411,984 + MPMX19_03124 0.54 -1.1
411,984 + MPMX19_03124 0.54 -0.9
411,984 + MPMX19_03124 0.54 -0.4
411,985 - MPMX19_03124 0.54 -0.1
411,985 - MPMX19_03124 0.54 -0.9
411,985 - MPMX19_03124 0.54 -0.5
411,985 - MPMX19_03124 0.54 -2.5
411,985 - MPMX19_03124 0.54 -0.1
411,985 - MPMX19_03124 0.54 +2.4
411,985 - MPMX19_03124 0.54 +0.4
412,032 + MPMX19_03124 0.59 +0.2
412,032 + MPMX19_03124 0.59 -0.7
412,032 + MPMX19_03124 0.59 -0.8
412,032 + MPMX19_03124 0.59 -0.6
412,032 + MPMX19_03124 0.59 -1.2
412,033 - MPMX19_03124 0.59 -0.1
412,033 - MPMX19_03124 0.59 -2.4
412,033 - MPMX19_03124 0.59 +1.6
412,033 - MPMX19_03124 0.59 +0.1
412,033 - MPMX19_03124 0.59 +0.4
412,212 + MPMX19_03124 0.80 -1.8
412,212 + MPMX19_03124 0.80 -1.8
412,239 + MPMX19_03124 0.83 -1.2
412,239 + MPMX19_03124 0.83 -0.7
412,239 + MPMX19_03124 0.83 -0.3
412,240 - MPMX19_03124 0.83 -1.5
412,240 - MPMX19_03124 0.83 +0.1
412,240 - MPMX19_03124 0.83 -1.2
412,474 + +0.1
412,474 + -1.4
412,475 - +0.6

Or see this region's nucleotide sequence