Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03097

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03094 and MPMX19_03095 are separated by 10 nucleotidesMPMX19_03095 and MPMX19_03096 are separated by 13 nucleotidesMPMX19_03096 and MPMX19_03097 overlap by 4 nucleotidesMPMX19_03097 and MPMX19_03098 overlap by 8 nucleotides MPMX19_03094: MPMX19_03094 - Metal ABC transporter substrate-binding lipoprotein, at 365,708 to 366,625 _03094 MPMX19_03095: MPMX19_03095 - hypothetical protein, at 366,636 to 367,229 _03095 MPMX19_03096: MPMX19_03096 - hypothetical protein, at 367,243 to 367,566 _03096 MPMX19_03097: MPMX19_03097 - hypothetical protein, at 367,563 to 368,036 _03097 MPMX19_03098: MPMX19_03098 - hypothetical protein, at 368,029 to 369,165 _03098 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 366.625 kb on + strandat 366.625 kb on + strandat 366.625 kb on + strandat 366.625 kb on + strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.626 kb on - strandat 366.838 kb on + strand, within MPMX19_03095at 366.838 kb on + strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 366.839 kb on - strand, within MPMX19_03095at 367.244 kb on + strandat 367.244 kb on + strandat 367.244 kb on + strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.554 kb on + strandat 367.554 kb on + strandat 367.555 kb on - strandat 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.858 kb on + strand, within MPMX19_03097at 367.859 kb on - strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.992 kb on + strandat 368.031 kb on - strandat 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.283 kb on - strand, within MPMX19_03098at 368.283 kb on - strand, within MPMX19_03098at 368.354 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.664 kb on - strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.747 kb on + strand, within MPMX19_03098

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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366,625 + -0.9
366,625 + +2.0
366,625 + -0.2
366,625 + +0.3
366,626 - +0.3
366,626 - +0.2
366,626 - +0.7
366,626 - +0.6
366,626 - +0.2
366,838 + MPMX19_03095 0.34 +0.6
366,838 + MPMX19_03095 0.34 -0.2
366,839 - MPMX19_03095 0.34 -0.3
366,839 - MPMX19_03095 0.34 -0.9
366,839 - MPMX19_03095 0.34 +0.3
366,839 - MPMX19_03095 0.34 +0.9
367,244 + +0.9
367,244 + +0.3
367,244 + +0.3
367,245 - -0.1
367,245 - -1.6
367,245 - -1.5
367,245 - -0.3
367,245 - +0.1
367,304 + MPMX19_03096 0.19 +0.7
367,304 + MPMX19_03096 0.19 -1.1
367,304 + MPMX19_03096 0.19 -1.0
367,305 - MPMX19_03096 0.19 +0.2
367,305 - MPMX19_03096 0.19 -1.3
367,305 - MPMX19_03096 0.19 -0.1
367,305 - MPMX19_03096 0.19 -0.1
367,554 + -0.4
367,554 + -0.1
367,555 - -0.3
367,810 + MPMX19_03097 0.52 -0.0
367,810 + MPMX19_03097 0.52 +0.9
367,810 + MPMX19_03097 0.52 +0.1
367,810 + MPMX19_03097 0.52 +0.4
367,810 + MPMX19_03097 0.52 -0.2
367,810 + MPMX19_03097 0.52 -0.5
367,810 + MPMX19_03097 0.52 +0.8
367,810 + MPMX19_03097 0.52 -0.3
367,810 + MPMX19_03097 0.52 +0.1
367,811 - MPMX19_03097 0.52 -2.2
367,811 - MPMX19_03097 0.52 +1.3
367,811 - MPMX19_03097 0.52 -0.6
367,811 - MPMX19_03097 0.52 -1.0
367,811 - MPMX19_03097 0.52 -0.0
367,811 - MPMX19_03097 0.52 -0.1
367,858 + MPMX19_03097 0.62 +0.1
367,859 - MPMX19_03097 0.62 -0.3
367,942 + MPMX19_03097 0.80 -0.5
367,942 + MPMX19_03097 0.80 -0.6
367,942 + MPMX19_03097 0.80 +0.9
367,942 + MPMX19_03097 0.80 +1.7
367,943 - MPMX19_03097 0.80 -0.1
367,943 - MPMX19_03097 0.80 +0.1
367,943 - MPMX19_03097 0.80 +1.3
367,943 - MPMX19_03097 0.80 -0.7
367,943 - MPMX19_03097 0.80 +0.2
367,943 - MPMX19_03097 0.80 +0.4
367,992 + -0.5
368,031 - -0.6
368,282 + MPMX19_03098 0.22 +1.5
368,282 + MPMX19_03098 0.22 -0.9
368,282 + MPMX19_03098 0.22 +1.1
368,282 + MPMX19_03098 0.22 +0.3
368,282 + MPMX19_03098 0.22 +0.6
368,282 + MPMX19_03098 0.22 -0.3
368,283 - MPMX19_03098 0.22 +0.7
368,283 - MPMX19_03098 0.22 -1.3
368,354 + MPMX19_03098 0.29 +0.5
368,537 + MPMX19_03098 0.45 +0.4
368,537 + MPMX19_03098 0.45 -1.2
368,537 + MPMX19_03098 0.45 -1.8
368,537 + MPMX19_03098 0.45 +0.9
368,537 + MPMX19_03098 0.45 -0.2
368,537 + MPMX19_03098 0.45 -0.9
368,537 + MPMX19_03098 0.45 -1.2
368,538 - MPMX19_03098 0.45 -0.1
368,538 - MPMX19_03098 0.45 -0.9
368,538 - MPMX19_03098 0.45 -1.2
368,538 - MPMX19_03098 0.45 +0.1
368,538 - MPMX19_03098 0.45 -1.3
368,538 - MPMX19_03098 0.45 +2.0
368,538 - MPMX19_03098 0.45 +0.4
368,538 - MPMX19_03098 0.45 -0.6
368,664 - MPMX19_03098 0.56 +0.4
368,687 + MPMX19_03098 0.58 -0.4
368,687 + MPMX19_03098 0.58 -1.9
368,687 + MPMX19_03098 0.58 +0.1
368,687 + MPMX19_03098 0.58 -1.6
368,687 + MPMX19_03098 0.58 +0.5
368,687 + MPMX19_03098 0.58 -1.7
368,688 - MPMX19_03098 0.58 -0.4
368,688 - MPMX19_03098 0.58 -0.6
368,688 - MPMX19_03098 0.58 +0.1
368,688 - MPMX19_03098 0.58 -0.9
368,688 - MPMX19_03098 0.58 -0.6
368,747 + MPMX19_03098 0.63 +1.3

Or see this region's nucleotide sequence