Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03093 and MPMX19_03094 overlap by 4 nucleotides MPMX19_03094 and MPMX19_03095 are separated by 10 nucleotides MPMX19_03095 and MPMX19_03096 are separated by 13 nucleotides MPMX19_03096 and MPMX19_03097 overlap by 4 nucleotides MPMX19_03097 and MPMX19_03098 overlap by 8 nucleotides
MPMX19_03093: MPMX19_03093 - Manganese import ATP-binding protein ScaC, at 364,971 to 365,711
_03093
MPMX19_03094: MPMX19_03094 - Metal ABC transporter substrate-binding lipoprotein, at 365,708 to 366,625
_03094
MPMX19_03095: MPMX19_03095 - hypothetical protein, at 366,636 to 367,229
_03095
MPMX19_03096: MPMX19_03096 - hypothetical protein, at 367,243 to 367,566
_03096
MPMX19_03097: MPMX19_03097 - hypothetical protein, at 367,563 to 368,036
_03097
MPMX19_03098: MPMX19_03098 - hypothetical protein, at 368,029 to 369,165
_03098
Position (kb)
366
367
368 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 365.787 kb on + strand at 365.787 kb on + strand at 365.788 kb on - strand at 365.817 kb on + strand, within MPMX19_03094 at 365.817 kb on + strand, within MPMX19_03094 at 365.817 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.856 kb on + strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 365.857 kb on - strand, within MPMX19_03094 at 366.009 kb on + strand, within MPMX19_03094 at 366.009 kb on + strand, within MPMX19_03094 at 366.010 kb on - strand, within MPMX19_03094 at 366.010 kb on - strand, within MPMX19_03094 at 366.010 kb on - strand, within MPMX19_03094 at 366.015 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.111 kb on + strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.112 kb on - strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.132 kb on + strand, within MPMX19_03094 at 366.133 kb on - strand, within MPMX19_03094 at 366.133 kb on - strand, within MPMX19_03094 at 366.133 kb on - strand, within MPMX19_03094 at 366.426 kb on + strand, within MPMX19_03094 at 366.427 kb on - strand, within MPMX19_03094 at 366.427 kb on - strand, within MPMX19_03094 at 366.427 kb on - strand, within MPMX19_03094 at 366.498 kb on + strand, within MPMX19_03094 at 366.499 kb on - strand, within MPMX19_03094 at 366.499 kb on - strand, within MPMX19_03094 at 366.504 kb on + strand, within MPMX19_03094 at 366.504 kb on + strand, within MPMX19_03094 at 366.504 kb on + strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.505 kb on - strand, within MPMX19_03094 at 366.507 kb on + strand, within MPMX19_03094 at 366.507 kb on + strand, within MPMX19_03094 at 366.625 kb on + strand at 366.625 kb on + strand at 366.625 kb on + strand at 366.625 kb on + strand at 366.626 kb on - strand at 366.626 kb on - strand at 366.626 kb on - strand at 366.626 kb on - strand at 366.626 kb on - strand at 366.838 kb on + strand, within MPMX19_03095 at 366.838 kb on + strand, within MPMX19_03095 at 366.839 kb on - strand, within MPMX19_03095 at 366.839 kb on - strand, within MPMX19_03095 at 366.839 kb on - strand, within MPMX19_03095 at 366.839 kb on - strand, within MPMX19_03095 at 367.244 kb on + strand at 367.244 kb on + strand at 367.244 kb on + strand at 367.245 kb on - strand at 367.245 kb on - strand at 367.245 kb on - strand at 367.245 kb on - strand at 367.245 kb on - strand at 367.304 kb on + strand, within MPMX19_03096 at 367.304 kb on + strand, within MPMX19_03096 at 367.304 kb on + strand, within MPMX19_03096 at 367.305 kb on - strand, within MPMX19_03096 at 367.305 kb on - strand, within MPMX19_03096 at 367.305 kb on - strand, within MPMX19_03096 at 367.305 kb on - strand, within MPMX19_03096 at 367.554 kb on + strand at 367.554 kb on + strand at 367.555 kb on - strand at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.810 kb on + strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.811 kb on - strand, within MPMX19_03097 at 367.858 kb on + strand, within MPMX19_03097 at 367.859 kb on - strand, within MPMX19_03097 at 367.942 kb on + strand, within MPMX19_03097 at 367.942 kb on + strand, within MPMX19_03097 at 367.942 kb on + strand, within MPMX19_03097 at 367.942 kb on + strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.943 kb on - strand, within MPMX19_03097 at 367.992 kb on + strand at 368.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 365,787 + -0.9 365,787 + -1.6 365,788 - -1.3 365,817 + MPMX19_03094 0.12 +1.3 365,817 + MPMX19_03094 0.12 +0.2 365,817 + MPMX19_03094 0.12 -0.9 365,856 + MPMX19_03094 0.16 -1.1 365,856 + MPMX19_03094 0.16 +1.9 365,856 + MPMX19_03094 0.16 -0.3 365,856 + MPMX19_03094 0.16 -0.1 365,856 + MPMX19_03094 0.16 -1.0 365,856 + MPMX19_03094 0.16 +0.9 365,856 + MPMX19_03094 0.16 +0.1 365,856 + MPMX19_03094 0.16 +0.7 365,856 + MPMX19_03094 0.16 +0.7 365,856 + MPMX19_03094 0.16 -0.7 365,856 + MPMX19_03094 0.16 -0.7 365,857 - MPMX19_03094 0.16 +0.2 365,857 - MPMX19_03094 0.16 -0.8 365,857 - MPMX19_03094 0.16 +0.4 365,857 - MPMX19_03094 0.16 -0.4 365,857 - MPMX19_03094 0.16 -0.1 365,857 - MPMX19_03094 0.16 -0.3 366,009 + MPMX19_03094 0.33 +0.4 366,009 + MPMX19_03094 0.33 -0.3 366,010 - MPMX19_03094 0.33 +1.4 366,010 - MPMX19_03094 0.33 +0.5 366,010 - MPMX19_03094 0.33 -0.3 366,015 + MPMX19_03094 0.33 +0.8 366,111 + MPMX19_03094 0.44 +0.3 366,111 + MPMX19_03094 0.44 +0.1 366,111 + MPMX19_03094 0.44 +0.5 366,111 + MPMX19_03094 0.44 +0.1 366,111 + MPMX19_03094 0.44 -1.3 366,111 + MPMX19_03094 0.44 -0.0 366,111 + MPMX19_03094 0.44 +0.5 366,112 - MPMX19_03094 0.44 -1.0 366,112 - MPMX19_03094 0.44 -0.5 366,112 - MPMX19_03094 0.44 -2.0 366,112 - MPMX19_03094 0.44 +0.2 366,112 - MPMX19_03094 0.44 +0.2 366,112 - MPMX19_03094 0.44 -0.7 366,132 + MPMX19_03094 0.46 +0.5 366,132 + MPMX19_03094 0.46 -0.3 366,132 + MPMX19_03094 0.46 -0.4 366,132 + MPMX19_03094 0.46 +0.3 366,132 + MPMX19_03094 0.46 +0.2 366,132 + MPMX19_03094 0.46 -1.1 366,132 + MPMX19_03094 0.46 -0.7 366,133 - MPMX19_03094 0.46 -0.1 366,133 - MPMX19_03094 0.46 -0.7 366,133 - MPMX19_03094 0.46 -0.9 366,426 + MPMX19_03094 0.78 -0.4 366,427 - MPMX19_03094 0.78 -0.1 366,427 - MPMX19_03094 0.78 -1.5 366,427 - MPMX19_03094 0.78 -0.5 366,498 + MPMX19_03094 0.86 -0.7 366,499 - MPMX19_03094 0.86 -1.8 366,499 - MPMX19_03094 0.86 -0.0 366,504 + MPMX19_03094 0.87 -0.3 366,504 + MPMX19_03094 0.87 -0.9 366,504 + MPMX19_03094 0.87 +0.8 366,505 - MPMX19_03094 0.87 -0.1 366,505 - MPMX19_03094 0.87 -1.2 366,505 - MPMX19_03094 0.87 +0.9 366,505 - MPMX19_03094 0.87 +1.2 366,505 - MPMX19_03094 0.87 +0.3 366,505 - MPMX19_03094 0.87 +2.5 366,505 - MPMX19_03094 0.87 +0.3 366,507 + MPMX19_03094 0.87 -1.6 366,507 + MPMX19_03094 0.87 -0.2 366,625 + -0.9 366,625 + +2.0 366,625 + -0.2 366,625 + +0.3 366,626 - +0.3 366,626 - +0.2 366,626 - +0.7 366,626 - +0.6 366,626 - +0.2 366,838 + MPMX19_03095 0.34 +0.6 366,838 + MPMX19_03095 0.34 -0.2 366,839 - MPMX19_03095 0.34 -0.3 366,839 - MPMX19_03095 0.34 -0.9 366,839 - MPMX19_03095 0.34 +0.3 366,839 - MPMX19_03095 0.34 +0.9 367,244 + +0.9 367,244 + +0.3 367,244 + +0.3 367,245 - -0.1 367,245 - -1.6 367,245 - -1.5 367,245 - -0.3 367,245 - +0.1 367,304 + MPMX19_03096 0.19 +0.7 367,304 + MPMX19_03096 0.19 -1.1 367,304 + MPMX19_03096 0.19 -1.0 367,305 - MPMX19_03096 0.19 +0.2 367,305 - MPMX19_03096 0.19 -1.3 367,305 - MPMX19_03096 0.19 -0.1 367,305 - MPMX19_03096 0.19 -0.1 367,554 + -0.4 367,554 + -0.1 367,555 - -0.3 367,810 + MPMX19_03097 0.52 -0.0 367,810 + MPMX19_03097 0.52 +0.9 367,810 + MPMX19_03097 0.52 +0.1 367,810 + MPMX19_03097 0.52 +0.4 367,810 + MPMX19_03097 0.52 -0.2 367,810 + MPMX19_03097 0.52 -0.5 367,810 + MPMX19_03097 0.52 +0.8 367,810 + MPMX19_03097 0.52 -0.3 367,810 + MPMX19_03097 0.52 +0.1 367,811 - MPMX19_03097 0.52 -2.2 367,811 - MPMX19_03097 0.52 +1.3 367,811 - MPMX19_03097 0.52 -0.6 367,811 - MPMX19_03097 0.52 -1.0 367,811 - MPMX19_03097 0.52 -0.0 367,811 - MPMX19_03097 0.52 -0.1 367,858 + MPMX19_03097 0.62 +0.1 367,859 - MPMX19_03097 0.62 -0.3 367,942 + MPMX19_03097 0.80 -0.5 367,942 + MPMX19_03097 0.80 -0.6 367,942 + MPMX19_03097 0.80 +0.9 367,942 + MPMX19_03097 0.80 +1.7 367,943 - MPMX19_03097 0.80 -0.1 367,943 - MPMX19_03097 0.80 +0.1 367,943 - MPMX19_03097 0.80 +1.3 367,943 - MPMX19_03097 0.80 -0.7 367,943 - MPMX19_03097 0.80 +0.2 367,943 - MPMX19_03097 0.80 +0.4 367,992 + -0.5 368,031 - -0.6
Or see this region's nucleotide sequence