Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03078

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03077 and MPMX19_03078 are separated by 60 nucleotidesMPMX19_03078 and MPMX19_03079 overlap by 4 nucleotides MPMX19_03077: MPMX19_03077 - N-acetylglucosamine-6-O-sulfatase, at 344,027 to 346,069 _03077 MPMX19_03078: MPMX19_03078 - hypothetical protein, at 346,130 to 346,315 _03078 MPMX19_03079: MPMX19_03079 - hypothetical protein, at 346,312 to 347,457 _03079 Position (kb) 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1at 345.143 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.167 kb on + strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.168 kb on - strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.868 kb on - strandat 345.965 kb on + strandat 345.966 kb on - strandat 345.966 kb on - strandat 345.966 kb on - strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.472 kb on + strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.625 kb on + strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.965 kb on - strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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345,143 + MPMX19_03077 0.55 -1.1
345,167 + MPMX19_03077 0.56 -0.9
345,167 + MPMX19_03077 0.56 -0.9
345,167 + MPMX19_03077 0.56 +0.3
345,168 - MPMX19_03077 0.56 +0.4
345,168 - MPMX19_03077 0.56 +1.4
345,168 - MPMX19_03077 0.56 -0.2
345,168 - MPMX19_03077 0.56 +0.3
345,168 - MPMX19_03077 0.56 -0.2
345,168 - MPMX19_03077 0.56 +0.5
345,326 + MPMX19_03077 0.64 +0.1
345,326 + MPMX19_03077 0.64 -0.1
345,326 + MPMX19_03077 0.64 -0.7
345,327 - MPMX19_03077 0.64 -0.1
345,327 - MPMX19_03077 0.64 +0.1
345,578 + MPMX19_03077 0.76 -1.3
345,578 + MPMX19_03077 0.76 -0.7
345,578 + MPMX19_03077 0.76 -0.9
345,578 + MPMX19_03077 0.76 +0.4
345,578 + MPMX19_03077 0.76 -0.5
345,578 + MPMX19_03077 0.76 -0.5
345,579 - MPMX19_03077 0.76 -1.1
345,579 - MPMX19_03077 0.76 -0.5
345,671 + MPMX19_03077 0.80 -0.4
345,671 + MPMX19_03077 0.80 -1.8
345,671 + MPMX19_03077 0.80 -2.1
345,671 + MPMX19_03077 0.80 +0.1
345,671 + MPMX19_03077 0.80 -2.2
345,671 + MPMX19_03077 0.80 +0.2
345,671 + MPMX19_03077 0.80 +0.7
345,672 - MPMX19_03077 0.81 -1.0
345,672 - MPMX19_03077 0.81 -0.9
345,672 - MPMX19_03077 0.81 +0.3
345,672 - MPMX19_03077 0.81 -0.7
345,672 - MPMX19_03077 0.81 -0.7
345,674 + MPMX19_03077 0.81 +0.4
345,674 + MPMX19_03077 0.81 -0.3
345,674 + MPMX19_03077 0.81 +0.4
345,674 + MPMX19_03077 0.81 -1.9
345,675 - MPMX19_03077 0.81 -0.4
345,675 - MPMX19_03077 0.81 -0.9
345,683 + MPMX19_03077 0.81 +0.7
345,683 + MPMX19_03077 0.81 -0.6
345,683 + MPMX19_03077 0.81 -2.1
345,683 + MPMX19_03077 0.81 -1.4
345,692 + MPMX19_03077 0.81 -1.4
345,692 + MPMX19_03077 0.81 +0.7
345,692 + MPMX19_03077 0.81 +0.1
345,692 + MPMX19_03077 0.81 +0.5
345,692 + MPMX19_03077 0.81 +0.4
345,692 + MPMX19_03077 0.81 -2.9
345,693 - MPMX19_03077 0.82 -1.3
345,693 - MPMX19_03077 0.82 +0.1
345,693 - MPMX19_03077 0.82 -0.2
345,693 - MPMX19_03077 0.82 -0.3
345,693 - MPMX19_03077 0.82 -0.5
345,693 - MPMX19_03077 0.82 +0.1
345,693 - MPMX19_03077 0.82 +1.7
345,693 - MPMX19_03077 0.82 -0.4
345,693 - MPMX19_03077 0.82 -0.9
345,825 - MPMX19_03077 0.88 +1.3
345,825 - MPMX19_03077 0.88 -1.5
345,866 + -0.6
345,866 + +0.5
345,866 + -0.2
345,866 + -0.7
345,866 + -0.3
345,866 + -0.8
345,866 + -0.5
345,866 + -1.0
345,866 + -1.9
345,867 - -0.3
345,867 - +0.1
345,867 - +0.1
345,867 - -0.3
345,867 - -0.9
345,868 - +0.7
345,965 + -1.2
345,966 - -0.5
345,966 - +0.5
345,966 - -0.0
346,047 + -0.2
346,047 + -0.5
346,047 + -0.4
346,047 + -1.6
346,048 - -1.3
346,048 - -1.3
346,048 - +0.4
346,397 + -0.5
346,397 + -0.7
346,397 + -0.1
346,397 + -0.2
346,398 - -0.0
346,398 - +1.4
346,398 - +0.3
346,398 - -0.5
346,472 + MPMX19_03079 0.14 -0.1
346,473 - MPMX19_03079 0.14 -0.4
346,473 - MPMX19_03079 0.14 +0.1
346,473 - MPMX19_03079 0.14 -0.8
346,517 + MPMX19_03079 0.18 +0.7
346,517 + MPMX19_03079 0.18 -2.0
346,517 + MPMX19_03079 0.18 +1.3
346,517 + MPMX19_03079 0.18 -0.4
346,517 + MPMX19_03079 0.18 -1.1
346,517 + MPMX19_03079 0.18 +0.4
346,517 + MPMX19_03079 0.18 -1.0
346,517 + MPMX19_03079 0.18 +0.3
346,517 + MPMX19_03079 0.18 -0.1
346,517 + MPMX19_03079 0.18 -0.9
346,518 - MPMX19_03079 0.18 -0.5
346,518 - MPMX19_03079 0.18 -0.6
346,518 - MPMX19_03079 0.18 -0.5
346,518 - MPMX19_03079 0.18 -0.7
346,518 - MPMX19_03079 0.18 -0.5
346,518 - MPMX19_03079 0.18 -0.7
346,518 - MPMX19_03079 0.18 -0.1
346,518 - MPMX19_03079 0.18 +0.7
346,625 + MPMX19_03079 0.27 +0.1
346,797 - MPMX19_03079 0.42 +0.9
346,797 - MPMX19_03079 0.42 -1.5
346,965 - MPMX19_03079 0.57 -0.6
347,243 + MPMX19_03079 0.81 -1.8
347,243 + MPMX19_03079 0.81 -1.4

Or see this region's nucleotide sequence