Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03072 and MPMX19_03073 are separated by 39 nucleotides MPMX19_03073 and MPMX19_03074 are separated by 154 nucleotides MPMX19_03074 and MPMX19_03075 are separated by 91 nucleotides
MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870
_03072
MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584
_03073
MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796
_03074
MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252
_03075
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.771 kb on + strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.777 kb on + strand, within MPMX19_03072 at 337.777 kb on + strand, within MPMX19_03072 at 337.778 kb on - strand, within MPMX19_03072 at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.879 kb on + strand at 337.879 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.929 kb on - strand at 337.929 kb on - strand at 337.972 kb on + strand at 338.027 kb on + strand, within MPMX19_03073 at 338.027 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.723 kb on + strand at 338.763 kb on - strand at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.029 kb on + strand, within MPMX19_03074 at 339.030 kb on - strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.163 kb on - strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.577 kb on - strand, within MPMX19_03074 at 339.577 kb on - strand, within MPMX19_03074 at 339.592 kb on - strand, within MPMX19_03074 at 339.592 kb on - strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.649 kb on - strand, within MPMX19_03074 at 339.649 kb on - strand, within MPMX19_03074 at 339.666 kb on + strand, within MPMX19_03074 at 339.667 kb on - strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.694 kb on - strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.753 kb on + strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.871 kb on - strand, within MPMX19_03074 at 340.050 kb on + strand, within MPMX19_03074 at 340.050 kb on + strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.098 kb on + strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.641 kb on + strand at 340.641 kb on + strand at 340.641 kb on + strand at 340.642 kb on - strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.669 kb on - strand at 340.669 kb on - strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.813 kb on - strand at 340.813 kb on - strand at 340.849 kb on + strand at 340.851 kb on + strand at 340.863 kb on + strand at 340.865 kb on + strand at 340.889 kb on + strand at 340.890 kb on - strand at 341.027 kb on + strand, within MPMX19_03075 at 341.027 kb on + strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.164 kb on - strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.388 kb on + strand, within MPMX19_03075 at 341.389 kb on - strand, within MPMX19_03075
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 337,771 + -1.8 337,772 - -0.8 337,772 - +1.0 337,772 - +0.8 337,777 + MPMX19_03072 0.13 +0.1 337,777 + MPMX19_03072 0.13 -1.1 337,778 - MPMX19_03072 0.14 +1.1 337,868 + -1.5 337,868 + -1.3 337,868 + -2.4 337,868 + -0.4 337,868 + +1.0 337,869 - +0.2 337,869 - -2.4 337,869 - -0.9 337,879 + -0.1 337,879 + +0.1 337,928 + -1.0 337,928 + +0.1 337,928 + -0.5 337,928 + +0.7 337,928 + +0.7 337,929 - -0.4 337,929 - -0.0 337,972 + -0.6 338,027 + MPMX19_03073 0.17 +0.3 338,027 + MPMX19_03073 0.17 -0.7 338,465 + MPMX19_03073 0.82 -0.3 338,465 + MPMX19_03073 0.82 -0.3 338,465 + MPMX19_03073 0.82 -1.1 338,466 - MPMX19_03073 0.82 -0.5 338,466 - MPMX19_03073 0.82 +0.7 338,466 - MPMX19_03073 0.82 -0.4 338,723 + -0.1 338,763 - -0.9 339,027 + MPMX19_03074 0.14 -1.3 339,027 + MPMX19_03074 0.14 -2.3 339,027 + MPMX19_03074 0.14 +0.5 339,027 + MPMX19_03074 0.14 -0.2 339,028 - MPMX19_03074 0.14 -1.5 339,028 - MPMX19_03074 0.14 +0.1 339,028 - MPMX19_03074 0.14 -0.0 339,028 - MPMX19_03074 0.14 -1.5 339,029 + MPMX19_03074 0.14 -0.8 339,030 - MPMX19_03074 0.14 -1.5 339,084 + MPMX19_03074 0.17 -0.6 339,084 + MPMX19_03074 0.17 -0.9 339,084 + MPMX19_03074 0.17 -1.1 339,084 + MPMX19_03074 0.17 -1.2 339,084 + MPMX19_03074 0.17 +1.1 339,084 + MPMX19_03074 0.17 -2.4 339,084 + MPMX19_03074 0.17 -0.6 339,085 - MPMX19_03074 0.17 +0.8 339,085 - MPMX19_03074 0.17 -1.1 339,085 - MPMX19_03074 0.17 +2.3 339,085 - MPMX19_03074 0.17 -0.8 339,085 - MPMX19_03074 0.17 +0.0 339,085 - MPMX19_03074 0.17 +0.1 339,162 + MPMX19_03074 0.21 +0.5 339,162 + MPMX19_03074 0.21 -1.6 339,162 + MPMX19_03074 0.21 +0.5 339,162 + MPMX19_03074 0.21 -1.5 339,163 - MPMX19_03074 0.21 -1.8 339,303 + MPMX19_03074 0.27 -1.0 339,303 + MPMX19_03074 0.27 +0.0 339,303 + MPMX19_03074 0.27 -0.1 339,304 - MPMX19_03074 0.27 +0.7 339,304 - MPMX19_03074 0.27 -0.2 339,304 - MPMX19_03074 0.27 -0.8 339,304 - MPMX19_03074 0.27 -0.5 339,304 - MPMX19_03074 0.27 -1.5 339,336 + MPMX19_03074 0.29 +0.1 339,336 + MPMX19_03074 0.29 -0.3 339,336 + MPMX19_03074 0.29 -0.8 339,337 - MPMX19_03074 0.29 -0.9 339,337 - MPMX19_03074 0.29 -1.3 339,337 - MPMX19_03074 0.29 -1.4 339,337 - MPMX19_03074 0.29 -0.8 339,337 - MPMX19_03074 0.29 +0.1 339,337 - MPMX19_03074 0.29 +0.4 339,499 - MPMX19_03074 0.37 -1.9 339,499 - MPMX19_03074 0.37 -1.4 339,499 - MPMX19_03074 0.37 +1.2 339,576 + MPMX19_03074 0.41 -2.2 339,576 + MPMX19_03074 0.41 -0.7 339,576 + MPMX19_03074 0.41 -2.0 339,576 + MPMX19_03074 0.41 +0.1 339,577 - MPMX19_03074 0.41 -1.3 339,577 - MPMX19_03074 0.41 -1.1 339,592 - MPMX19_03074 0.41 -1.9 339,592 - MPMX19_03074 0.41 -0.6 339,612 + MPMX19_03074 0.42 +0.8 339,612 + MPMX19_03074 0.42 -0.5 339,612 + MPMX19_03074 0.42 -0.9 339,612 + MPMX19_03074 0.42 +0.1 339,613 - MPMX19_03074 0.42 -1.3 339,613 - MPMX19_03074 0.42 -1.7 339,613 - MPMX19_03074 0.42 -0.6 339,613 - MPMX19_03074 0.42 +0.1 339,649 - MPMX19_03074 0.44 +1.3 339,649 - MPMX19_03074 0.44 +0.7 339,666 + MPMX19_03074 0.45 -0.1 339,667 - MPMX19_03074 0.45 -1.5 339,669 + MPMX19_03074 0.45 -2.8 339,669 + MPMX19_03074 0.45 -0.2 339,669 + MPMX19_03074 0.45 -0.3 339,669 + MPMX19_03074 0.45 +0.7 339,669 + MPMX19_03074 0.45 -1.6 339,669 + MPMX19_03074 0.45 +0.3 339,670 - MPMX19_03074 0.45 -0.4 339,670 - MPMX19_03074 0.45 -2.0 339,670 - MPMX19_03074 0.45 -0.7 339,670 - MPMX19_03074 0.45 -0.4 339,670 - MPMX19_03074 0.45 -1.7 339,670 - MPMX19_03074 0.45 +0.9 339,693 + MPMX19_03074 0.46 +1.3 339,693 + MPMX19_03074 0.46 -0.5 339,693 + MPMX19_03074 0.46 -0.5 339,693 + MPMX19_03074 0.46 +0.7 339,693 + MPMX19_03074 0.46 +0.5 339,693 + MPMX19_03074 0.46 -0.1 339,693 + MPMX19_03074 0.46 +0.3 339,694 - MPMX19_03074 0.46 +0.7 339,750 + MPMX19_03074 0.49 -0.4 339,750 + MPMX19_03074 0.49 -0.6 339,750 + MPMX19_03074 0.49 -0.2 339,750 + MPMX19_03074 0.49 +1.5 339,750 + MPMX19_03074 0.49 -0.7 339,750 + MPMX19_03074 0.49 -0.3 339,751 - MPMX19_03074 0.49 -0.1 339,751 - MPMX19_03074 0.49 -0.0 339,751 - MPMX19_03074 0.49 -1.4 339,751 - MPMX19_03074 0.49 -0.6 339,751 - MPMX19_03074 0.49 +1.4 339,751 - MPMX19_03074 0.49 -0.4 339,751 - MPMX19_03074 0.49 -0.1 339,751 - MPMX19_03074 0.49 -0.2 339,751 - MPMX19_03074 0.49 +0.3 339,751 - MPMX19_03074 0.49 +0.4 339,751 - MPMX19_03074 0.49 -1.0 339,753 + MPMX19_03074 0.49 +0.0 339,754 - MPMX19_03074 0.49 -1.5 339,754 - MPMX19_03074 0.49 -0.2 339,754 - MPMX19_03074 0.49 -1.9 339,754 - MPMX19_03074 0.49 -0.1 339,754 - MPMX19_03074 0.49 -1.2 339,768 + MPMX19_03074 0.50 -1.8 339,768 + MPMX19_03074 0.50 -1.1 339,768 + MPMX19_03074 0.50 -0.4 339,769 - MPMX19_03074 0.50 -2.3 339,769 - MPMX19_03074 0.50 +0.4 339,769 - MPMX19_03074 0.50 -1.9 339,871 - MPMX19_03074 0.55 -0.3 340,050 + MPMX19_03074 0.64 -1.6 340,050 + MPMX19_03074 0.64 -0.8 340,051 - MPMX19_03074 0.64 +0.8 340,051 - MPMX19_03074 0.64 -0.6 340,098 + MPMX19_03074 0.66 -1.5 340,099 - MPMX19_03074 0.66 +0.2 340,099 - MPMX19_03074 0.66 -1.4 340,099 - MPMX19_03074 0.66 -2.4 340,236 + MPMX19_03074 0.73 -1.1 340,236 + MPMX19_03074 0.73 -2.2 340,236 + MPMX19_03074 0.73 -0.3 340,236 + MPMX19_03074 0.73 +0.1 340,236 + MPMX19_03074 0.73 -0.5 340,237 - MPMX19_03074 0.73 -1.3 340,237 - MPMX19_03074 0.73 -1.3 340,237 - MPMX19_03074 0.73 +0.0 340,446 + MPMX19_03074 0.83 -0.1 340,446 + MPMX19_03074 0.83 -1.3 340,446 + MPMX19_03074 0.83 -0.3 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -0.8 340,446 + MPMX19_03074 0.83 -1.2 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -0.8 340,446 + MPMX19_03074 0.83 -0.9 340,446 + MPMX19_03074 0.83 -0.6 340,446 + MPMX19_03074 0.83 +0.1 340,446 + MPMX19_03074 0.83 -1.5 340,446 + MPMX19_03074 0.83 -1.6 340,446 + MPMX19_03074 0.83 -0.3 340,446 + MPMX19_03074 0.83 +0.1 340,447 - MPMX19_03074 0.83 -0.6 340,447 - MPMX19_03074 0.83 -1.3 340,447 - MPMX19_03074 0.83 -0.6 340,447 - MPMX19_03074 0.83 +0.1 340,447 - MPMX19_03074 0.83 -3.2 340,641 + +0.1 340,641 + -0.6 340,641 + -0.4 340,642 - -0.4 340,668 + +0.1 340,668 + -2.6 340,668 + +0.6 340,669 - -0.6 340,669 - -0.1 340,728 + -0.9 340,728 + -0.4 340,728 + -2.2 340,728 + -0.6 340,728 + -1.8 340,729 - -0.0 340,729 - -0.7 340,729 - -0.5 340,729 - +0.8 340,729 - -0.5 340,729 - -0.2 340,812 + -0.5 340,812 + -2.1 340,812 + -0.0 340,813 - +0.9 340,813 - +0.7 340,849 + +0.3 340,851 + +0.1 340,863 + -0.6 340,865 + -0.6 340,889 + +0.3 340,890 - -0.6 341,027 + MPMX19_03075 0.10 +0.2 341,027 + MPMX19_03075 0.10 +0.4 341,028 - MPMX19_03075 0.10 -0.3 341,028 - MPMX19_03075 0.10 +0.1 341,028 - MPMX19_03075 0.10 -0.2 341,028 - MPMX19_03075 0.10 +0.3 341,028 - MPMX19_03075 0.10 -0.4 341,028 - MPMX19_03075 0.10 -2.3 341,164 - MPMX19_03075 0.20 -0.1 341,333 + MPMX19_03075 0.33 -1.1 341,333 + MPMX19_03075 0.33 -0.4 341,333 + MPMX19_03075 0.33 -0.6 341,333 + MPMX19_03075 0.33 +0.5 341,334 - MPMX19_03075 0.33 +0.9 341,334 - MPMX19_03075 0.33 -1.3 341,334 - MPMX19_03075 0.33 +0.1 341,334 - MPMX19_03075 0.33 +0.5 341,388 + MPMX19_03075 0.37 -0.1 341,389 - MPMX19_03075 0.37 -0.6
Or see this region's nucleotide sequence