Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03058 and MPMX19_03059 are separated by 238 nucleotides MPMX19_03059 and MPMX19_03060 are separated by 13 nucleotides MPMX19_03060 and MPMX19_03061 overlap by 14 nucleotides MPMX19_03061 and MPMX19_03062 are separated by 59 nucleotides
MPMX19_03058: MPMX19_03058 - hypothetical protein, at 322,374 to 324,695
_03058
MPMX19_03059: MPMX19_03059 - hypothetical protein, at 324,934 to 325,161
_03059
MPMX19_03060: MPMX19_03060 - Ferredoxin-type protein NapF, at 325,175 to 325,720
_03060
MPMX19_03061: MPMX19_03061 - Chaperone NapD, at 325,707 to 326,009
_03061
MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561
_03062
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.250 kb on + strand, within MPMX19_03058 at 324.250 kb on + strand, within MPMX19_03058 at 324.250 kb on + strand, within MPMX19_03058 at 324.250 kb on + strand, within MPMX19_03058 at 324.250 kb on + strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.251 kb on - strand, within MPMX19_03058 at 324.421 kb on + strand, within MPMX19_03058 at 324.422 kb on - strand, within MPMX19_03058 at 324.422 kb on - strand, within MPMX19_03058 at 324.422 kb on - strand, within MPMX19_03058 at 324.451 kb on + strand, within MPMX19_03058 at 324.451 kb on + strand, within MPMX19_03058 at 324.451 kb on + strand, within MPMX19_03058 at 324.452 kb on - strand, within MPMX19_03058 at 324.452 kb on - strand, within MPMX19_03058 at 324.538 kb on + strand at 324.538 kb on + strand at 324.538 kb on + strand at 324.538 kb on + strand at 324.539 kb on - strand at 324.539 kb on - strand at 324.539 kb on - strand at 324.645 kb on + strand at 324.645 kb on + strand at 324.645 kb on + strand at 324.646 kb on - strand at 324.646 kb on - strand at 324.646 kb on - strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.843 kb on + strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 324.844 kb on - strand at 325.100 kb on - strand, within MPMX19_03059 at 325.191 kb on + strand at 325.191 kb on + strand at 325.191 kb on + strand at 325.192 kb on - strand at 325.192 kb on - strand at 325.206 kb on + strand at 325.207 kb on - strand at 325.290 kb on - strand, within MPMX19_03060 at 325.723 kb on + strand at 325.723 kb on + strand at 325.723 kb on + strand at 325.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 324,250 + MPMX19_03058 0.81 +0.6 324,250 + MPMX19_03058 0.81 -1.5 324,250 + MPMX19_03058 0.81 -0.7 324,250 + MPMX19_03058 0.81 -0.7 324,250 + MPMX19_03058 0.81 +1.1 324,251 - MPMX19_03058 0.81 -0.9 324,251 - MPMX19_03058 0.81 -1.8 324,251 - MPMX19_03058 0.81 -0.3 324,251 - MPMX19_03058 0.81 -2.3 324,251 - MPMX19_03058 0.81 +0.3 324,251 - MPMX19_03058 0.81 -0.7 324,251 - MPMX19_03058 0.81 -1.2 324,421 + MPMX19_03058 0.88 +0.1 324,422 - MPMX19_03058 0.88 -0.9 324,422 - MPMX19_03058 0.88 +0.4 324,422 - MPMX19_03058 0.88 +0.1 324,451 + MPMX19_03058 0.89 -0.6 324,451 + MPMX19_03058 0.89 -0.2 324,451 + MPMX19_03058 0.89 +0.1 324,452 - MPMX19_03058 0.89 -1.7 324,452 - MPMX19_03058 0.89 -1.8 324,538 + -0.3 324,538 + -2.0 324,538 + -0.3 324,538 + -1.1 324,539 - -2.0 324,539 - -1.9 324,539 - -1.0 324,645 + -1.5 324,645 + -1.1 324,645 + -0.3 324,646 - +0.3 324,646 - +0.5 324,646 - +0.1 324,843 + -0.9 324,843 + -0.7 324,843 + -0.7 324,843 + +0.7 324,843 + -1.1 324,843 + -2.3 324,843 + +0.3 324,843 + -0.0 324,843 + -0.8 324,843 + -1.9 324,843 + +0.4 324,844 - -0.3 324,844 - -0.4 324,844 - -0.6 324,844 - -0.1 324,844 - +1.0 324,844 - +2.3 324,844 - -1.2 324,844 - -0.7 324,844 - -0.7 325,100 - MPMX19_03059 0.73 -1.0 325,191 + -1.1 325,191 + -2.3 325,191 + -0.3 325,192 - -0.6 325,192 - +0.3 325,206 + +0.9 325,207 - -0.1 325,290 - MPMX19_03060 0.21 -2.4 325,723 + -0.3 325,723 + -0.8 325,723 + -0.4 325,724 - -1.3
Or see this region's nucleotide sequence