Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03038 and MPMX19_03039 are separated by 123 nucleotides MPMX19_03039 and MPMX19_03040 are separated by 116 nucleotides MPMX19_03040 and MPMX19_03041 overlap by 19 nucleotides MPMX19_03041 and MPMX19_03042 are separated by 109 nucleotides
MPMX19_03038: MPMX19_03038 - hypothetical protein, at 305,400 to 306,530
_03038
MPMX19_03039: MPMX19_03039 - Cyclic AMP receptor protein, at 306,654 to 307,373
_03039
MPMX19_03040: MPMX19_03040 - hypothetical protein, at 307,490 to 307,780
_03040
MPMX19_03041: MPMX19_03041 - hypothetical protein, at 307,762 to 308,253
_03041
MPMX19_03042: MPMX19_03042 - hypothetical protein, at 308,363 to 308,893
_03042
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.761 kb on + strand, within MPMX19_03038 at 305.761 kb on + strand, within MPMX19_03038 at 305.761 kb on + strand, within MPMX19_03038 at 305.761 kb on + strand, within MPMX19_03038 at 305.762 kb on - strand, within MPMX19_03038 at 305.762 kb on - strand, within MPMX19_03038 at 305.762 kb on - strand, within MPMX19_03038 at 306.364 kb on + strand, within MPMX19_03038 at 306.365 kb on - strand, within MPMX19_03038 at 306.365 kb on - strand, within MPMX19_03038 at 306.365 kb on - strand, within MPMX19_03038 at 306.365 kb on - strand, within MPMX19_03038 at 306.365 kb on - strand, within MPMX19_03038 at 306.463 kb on + strand at 306.463 kb on + strand at 306.463 kb on + strand at 306.464 kb on - strand at 306.464 kb on - strand at 306.464 kb on - strand at 306.464 kb on - strand at 306.464 kb on - strand at 306.481 kb on + strand at 306.481 kb on + strand at 306.482 kb on - strand at 306.680 kb on - strand at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.934 kb on - strand, within MPMX19_03039 at 306.934 kb on - strand, within MPMX19_03039 at 307.362 kb on - strand at 307.371 kb on + strand at 307.372 kb on - strand at 307.372 kb on - strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.386 kb on - strand at 307.386 kb on - strand at 307.450 kb on + strand at 307.524 kb on + strand, within MPMX19_03040 at 307.525 kb on - strand, within MPMX19_03040 at 307.656 kb on - strand, within MPMX19_03040 at 308.311 kb on + strand at 308.311 kb on + strand at 308.311 kb on + strand at 308.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 305,761 + MPMX19_03038 0.32 -0.1 305,761 + MPMX19_03038 0.32 -0.3 305,761 + MPMX19_03038 0.32 -0.2 305,761 + MPMX19_03038 0.32 -1.3 305,762 - MPMX19_03038 0.32 -1.1 305,762 - MPMX19_03038 0.32 +0.4 305,762 - MPMX19_03038 0.32 -1.3 306,364 + MPMX19_03038 0.85 -0.3 306,365 - MPMX19_03038 0.85 +0.4 306,365 - MPMX19_03038 0.85 +0.1 306,365 - MPMX19_03038 0.85 -2.4 306,365 - MPMX19_03038 0.85 -0.7 306,365 - MPMX19_03038 0.85 -0.9 306,463 + -1.1 306,463 + +0.1 306,463 + +0.4 306,464 - -1.1 306,464 - -2.6 306,464 - +0.5 306,464 - +0.2 306,464 - +0.3 306,481 + -0.7 306,481 + -1.8 306,482 - -0.3 306,680 - -0.5 306,933 + MPMX19_03039 0.39 -2.3 306,933 + MPMX19_03039 0.39 +0.6 306,933 + MPMX19_03039 0.39 -1.5 306,933 + MPMX19_03039 0.39 -0.9 306,934 - MPMX19_03039 0.39 -0.3 306,934 - MPMX19_03039 0.39 -1.5 307,362 - +0.7 307,371 + -1.0 307,372 - -0.0 307,372 - -1.1 307,385 + -0.3 307,385 + +1.1 307,385 + -1.5 307,386 - +0.4 307,386 - -2.1 307,450 + -0.7 307,524 + MPMX19_03040 0.12 -1.5 307,525 - MPMX19_03040 0.12 -0.7 307,656 - MPMX19_03040 0.57 -0.4 308,311 + -1.3 308,311 + -0.6 308,311 + -0.9 308,312 - -0.8
Or see this region's nucleotide sequence