Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02962 and MPMX19_02963 are separated by 246 nucleotides MPMX19_02963 and MPMX19_02964 overlap by 1 nucleotides MPMX19_02964 and MPMX19_02965 are separated by 30 nucleotides
MPMX19_02962: MPMX19_02962 - hypothetical protein, at 223,362 to 224,165
_02962
MPMX19_02963: MPMX19_02963 - hypothetical protein, at 224,412 to 224,672
_02963
MPMX19_02964: MPMX19_02964 - hypothetical protein, at 224,672 to 224,851
_02964
MPMX19_02965: MPMX19_02965 - hypothetical protein, at 224,882 to 225,073
_02965
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.397 kb on + strand at 222.397 kb on + strand at 222.397 kb on + strand at 222.398 kb on - strand at 222.466 kb on + strand at 222.477 kb on + strand at 222.480 kb on - strand at 222.486 kb on + strand at 222.487 kb on - strand at 222.509 kb on + strand at 222.521 kb on - strand at 222.531 kb on + strand at 222.651 kb on - strand at 222.651 kb on - strand at 222.738 kb on + strand at 222.739 kb on - strand at 222.791 kb on - strand at 222.840 kb on - strand at 223.018 kb on + strand at 223.085 kb on - strand at 223.114 kb on - strand at 223.165 kb on - strand at 223.229 kb on - strand at 223.261 kb on + strand at 223.265 kb on + strand at 223.287 kb on - strand at 223.316 kb on + strand at 223.493 kb on + strand, within MPMX19_02962 at 223.495 kb on + strand, within MPMX19_02962 at 223.557 kb on - strand, within MPMX19_02962 at 223.766 kb on + strand, within MPMX19_02962 at 223.766 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.835 kb on - strand, within MPMX19_02962 at 223.835 kb on - strand, within MPMX19_02962 at 223.881 kb on - strand, within MPMX19_02962 at 223.885 kb on - strand, within MPMX19_02962 at 223.959 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.055 kb on + strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.135 kb on + strand at 224.136 kb on - strand at 224.177 kb on - strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.188 kb on - strand at 224.188 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.204 kb on + strand at 224.204 kb on + strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.280 kb on - strand at 224.280 kb on - strand at 224.330 kb on - strand at 224.330 kb on - strand at 224.371 kb on - strand at 224.371 kb on - strand at 224.444 kb on + strand, within MPMX19_02963 at 224.488 kb on + strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.635 kb on + strand, within MPMX19_02963 at 224.636 kb on - strand, within MPMX19_02963 at 224.788 kb on - strand, within MPMX19_02964 at 224.852 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.942 kb on - strand, within MPMX19_02965 at 224.942 kb on - strand, within MPMX19_02965 at 224.962 kb on + strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 225.067 kb on - strand at 225.092 kb on + strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 222,397 + -1.8 222,397 + -1.0 222,397 + -1.2 222,398 - +0.3 222,466 + +0.1 222,477 + -2.4 222,480 - -1.4 222,486 + -0.2 222,487 - -1.5 222,509 + +0.2 222,521 - -0.7 222,531 + +0.5 222,651 - -0.4 222,651 - -1.3 222,738 + -0.4 222,739 - -0.2 222,791 - +0.8 222,840 - -2.4 223,018 + -0.3 223,085 - -1.6 223,114 - -0.6 223,165 - -1.9 223,229 - +0.6 223,261 + -0.5 223,265 + -1.5 223,287 - -0.2 223,316 + -0.3 223,493 + MPMX19_02962 0.16 -1.3 223,495 + MPMX19_02962 0.17 -1.3 223,557 - MPMX19_02962 0.24 -0.1 223,766 + MPMX19_02962 0.50 -1.5 223,766 + MPMX19_02962 0.50 -1.4 223,832 + MPMX19_02962 0.58 -1.4 223,832 + MPMX19_02962 0.58 -0.3 223,832 + MPMX19_02962 0.58 -0.6 223,832 + MPMX19_02962 0.58 -1.4 223,835 - MPMX19_02962 0.59 -0.5 223,835 - MPMX19_02962 0.59 -0.2 223,881 - MPMX19_02962 0.65 -0.2 223,885 - MPMX19_02962 0.65 -1.3 223,959 + MPMX19_02962 0.74 -1.3 224,013 + MPMX19_02962 0.81 -0.8 224,013 + MPMX19_02962 0.81 -1.6 224,014 - MPMX19_02962 0.81 -0.2 224,014 - MPMX19_02962 0.81 -0.4 224,014 - MPMX19_02962 0.81 -0.7 224,014 - MPMX19_02962 0.81 -0.5 224,055 + MPMX19_02962 0.86 -0.7 224,056 - MPMX19_02962 0.86 +0.4 224,056 - MPMX19_02962 0.86 -1.0 224,135 + -0.2 224,136 - -0.4 224,177 - -1.0 224,185 + -1.9 224,185 + +0.5 224,185 + -0.7 224,186 - +0.6 224,186 - +1.0 224,186 - -0.4 224,186 - -0.2 224,187 + +0.1 224,187 + -0.7 224,187 + -1.6 224,188 - -0.9 224,188 - +0.8 224,201 - -0.6 224,201 - +0.6 224,201 - +0.3 224,204 + -1.3 224,204 + +0.1 224,205 - -2.3 224,205 - +0.1 224,205 - -0.7 224,205 - -0.7 224,279 + -1.2 224,279 + -1.4 224,279 + +0.9 224,279 + -0.5 224,280 - -1.5 224,280 - -0.5 224,330 - -0.2 224,330 - -1.2 224,371 - +0.3 224,371 - -0.9 224,444 + MPMX19_02963 0.12 +0.2 224,488 + MPMX19_02963 0.29 -0.4 224,489 - MPMX19_02963 0.30 +0.1 224,489 - MPMX19_02963 0.30 -0.3 224,506 + MPMX19_02963 0.36 +0.8 224,506 + MPMX19_02963 0.36 -1.1 224,506 + MPMX19_02963 0.36 -0.9 224,506 + MPMX19_02963 0.36 -0.6 224,506 + MPMX19_02963 0.36 +0.6 224,506 + MPMX19_02963 0.36 -1.5 224,506 + MPMX19_02963 0.36 +0.4 224,506 + MPMX19_02963 0.36 -1.7 224,506 + MPMX19_02963 0.36 +0.6 224,506 + MPMX19_02963 0.36 +0.3 224,506 + MPMX19_02963 0.36 +1.0 224,506 + MPMX19_02963 0.36 +0.1 224,506 + MPMX19_02963 0.36 -0.7 224,506 + MPMX19_02963 0.36 -1.3 224,506 + MPMX19_02963 0.36 +0.6 224,506 + MPMX19_02963 0.36 -0.0 224,507 - MPMX19_02963 0.36 -1.2 224,507 - MPMX19_02963 0.36 +0.7 224,507 - MPMX19_02963 0.36 +0.0 224,507 - MPMX19_02963 0.36 -1.5 224,507 - MPMX19_02963 0.36 -1.4 224,507 - MPMX19_02963 0.36 +0.5 224,507 - MPMX19_02963 0.36 +0.5 224,507 - MPMX19_02963 0.36 -0.1 224,507 - MPMX19_02963 0.36 -0.9 224,507 - MPMX19_02963 0.36 -1.6 224,508 + MPMX19_02963 0.37 +0.3 224,508 + MPMX19_02963 0.37 -1.2 224,508 + MPMX19_02963 0.37 -0.4 224,509 - MPMX19_02963 0.37 +0.5 224,509 - MPMX19_02963 0.37 -0.9 224,635 + MPMX19_02963 0.85 +0.8 224,636 - MPMX19_02963 0.86 -0.7 224,788 - MPMX19_02964 0.64 -0.8 224,852 - -0.8 224,873 - +1.2 224,873 - -2.2 224,873 - -0.7 224,942 - MPMX19_02965 0.31 -0.4 224,942 - MPMX19_02965 0.31 -0.0 224,962 + MPMX19_02965 0.42 -0.7 224,963 - MPMX19_02965 0.42 -0.3 224,963 - MPMX19_02965 0.42 -1.2 224,964 + MPMX19_02965 0.43 -1.7 224,964 + MPMX19_02965 0.43 -0.5 224,964 + MPMX19_02965 0.43 -1.2 224,965 - MPMX19_02965 0.43 +1.3 224,965 - MPMX19_02965 0.43 -1.1 224,965 - MPMX19_02965 0.43 +0.6 224,965 - MPMX19_02965 0.43 -1.2 224,965 - MPMX19_02965 0.43 +0.3 225,067 - -1.5 225,092 + -0.1 225,093 - -0.9 225,093 - -1.8 225,093 - -0.8 225,093 - +0.3 225,093 - -2.1 225,110 + -2.0 225,110 + -0.3 225,110 + -0.5 225,110 + +0.1 225,110 + -1.0 225,110 + -0.8 225,110 + +0.1 225,110 + +0.5 225,110 + +1.6 225,110 + -1.5 225,110 + +0.6 225,110 + -0.5 225,110 + +0.5 225,110 + +0.1 225,111 - -0.7 225,111 - -1.2 225,111 - -1.9 225,111 - +0.9 225,111 - -1.3 225,111 - -0.1 225,111 - -1.6 225,111 - -0.0 225,112 + -2.5 225,112 + +0.1 225,112 + -1.0 225,112 + -0.9 225,112 + -1.3 225,112 + -0.6 225,112 + -0.5 225,112 + -1.4 225,112 + +0.2 225,112 + +0.1 225,112 + +0.6 225,112 + -0.2 225,112 + -0.8 225,112 + -1.7 225,112 + +1.6 225,112 + +0.6 225,112 + -1.4 225,113 - -0.2 225,113 - +0.3 225,113 - -2.8 225,113 - +0.5 225,113 - -0.9 225,113 - -1.8 225,113 - -0.3 225,113 - -0.4 225,113 - -1.3 225,113 - -1.0
Or see this region's nucleotide sequence