Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02943

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02942 and MPMX19_02943 are separated by 41 nucleotidesMPMX19_02943 and MPMX19_02944 are separated by 13 nucleotides MPMX19_02942: MPMX19_02942 - Transketolase 1, at 199,587 to 201,665 _02942 MPMX19_02943: MPMX19_02943 - Phosphoribulokinase, chromosomal, at 201,707 to 202,582 _02943 MPMX19_02944: MPMX19_02944 - Fructose-1,6-bisphosphatase class 1, at 202,596 to 203,708 _02944 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1at 200.909 kb on - strand, within MPMX19_02942at 200.950 kb on + strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.265 kb on + strand, within MPMX19_02942at 201.266 kb on - strand, within MPMX19_02942at 201.334 kb on + strand, within MPMX19_02942at 201.334 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.359 kb on - strand, within MPMX19_02942at 201.359 kb on - strand, within MPMX19_02942at 201.585 kb on - strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.672 kb on + strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.709 kb on - strandat 201.849 kb on + strand, within MPMX19_02943at 201.850 kb on - strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943at 202.684 kb on + strandat 202.685 kb on - strandat 202.697 kb on - strandat 202.697 kb on - strandat 202.849 kb on + strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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200,909 - MPMX19_02942 0.64 +0.8
200,950 + MPMX19_02942 0.66 +0.2
200,951 - MPMX19_02942 0.66 -0.8
200,951 - MPMX19_02942 0.66 +0.0
200,951 - MPMX19_02942 0.66 +1.0
201,028 + MPMX19_02942 0.69 +0.4
201,028 + MPMX19_02942 0.69 -0.1
201,028 + MPMX19_02942 0.69 -0.3
201,029 - MPMX19_02942 0.69 -0.3
201,029 - MPMX19_02942 0.69 +0.1
201,029 - MPMX19_02942 0.69 -0.3
201,265 + MPMX19_02942 0.81 -0.7
201,266 - MPMX19_02942 0.81 -1.4
201,334 + MPMX19_02942 0.84 +0.2
201,334 + MPMX19_02942 0.84 -0.8
201,358 + MPMX19_02942 0.85 -1.1
201,358 + MPMX19_02942 0.85 -0.5
201,358 + MPMX19_02942 0.85 -1.3
201,359 - MPMX19_02942 0.85 -0.8
201,359 - MPMX19_02942 0.85 -1.1
201,585 - +0.7
201,585 - -0.9
201,585 - -0.6
201,585 - +0.5
201,672 + -0.1
201,673 - +0.1
201,673 - -0.5
201,673 - -0.3
201,708 + -1.3
201,708 + -0.7
201,709 - +0.6
201,849 + MPMX19_02943 0.16 +0.2
201,850 - MPMX19_02943 0.16 +1.7
202,002 + MPMX19_02943 0.34 +1.1
202,002 + MPMX19_02943 0.34 -2.6
202,002 + MPMX19_02943 0.34 +0.2
202,002 + MPMX19_02943 0.34 +0.1
202,002 + MPMX19_02943 0.34 -2.0
202,002 + MPMX19_02943 0.34 -0.8
202,002 + MPMX19_02943 0.34 -1.4
202,002 + MPMX19_02943 0.34 -1.5
202,002 + MPMX19_02943 0.34 -1.1
202,003 - MPMX19_02943 0.34 -2.2
202,003 - MPMX19_02943 0.34 -1.1
202,003 - MPMX19_02943 0.34 -1.1
202,011 + MPMX19_02943 0.35 -0.7
202,011 + MPMX19_02943 0.35 +0.3
202,011 + MPMX19_02943 0.35 -0.1
202,011 + MPMX19_02943 0.35 +1.1
202,194 + MPMX19_02943 0.56 -1.0
202,194 + MPMX19_02943 0.56 -0.3
202,195 - MPMX19_02943 0.56 -0.7
202,195 - MPMX19_02943 0.56 +0.1
202,195 - MPMX19_02943 0.56 +0.1
202,323 + MPMX19_02943 0.70 +0.1
202,323 + MPMX19_02943 0.70 -0.9
202,324 - MPMX19_02943 0.70 -2.0
202,324 - MPMX19_02943 0.70 -1.8
202,684 + +0.1
202,685 - +0.7
202,697 - -2.1
202,697 - -0.1
202,849 + MPMX19_02944 0.23 +0.5
202,850 - MPMX19_02944 0.23 +0.9
202,850 - MPMX19_02944 0.23 -2.2
203,020 + MPMX19_02944 0.38 +0.2
203,020 + MPMX19_02944 0.38 -0.4
203,020 + MPMX19_02944 0.38 +0.0
203,020 + MPMX19_02944 0.38 -1.7
203,020 + MPMX19_02944 0.38 -0.3
203,020 + MPMX19_02944 0.38 +0.2
203,020 + MPMX19_02944 0.38 -1.7
203,020 + MPMX19_02944 0.38 -1.1
203,020 + MPMX19_02944 0.38 +1.1
203,020 + MPMX19_02944 0.38 -1.1
203,020 + MPMX19_02944 0.38 -1.2
203,020 + MPMX19_02944 0.38 -0.0
203,020 + MPMX19_02944 0.38 -0.3
203,020 + MPMX19_02944 0.38 +1.4
203,020 + MPMX19_02944 0.38 +0.7
203,020 + MPMX19_02944 0.38 +1.0
203,020 + MPMX19_02944 0.38 -1.1
203,020 + MPMX19_02944 0.38 -2.2
203,020 + MPMX19_02944 0.38 -0.8
203,020 + MPMX19_02944 0.38 +0.3
203,020 + MPMX19_02944 0.38 -1.0
203,020 + MPMX19_02944 0.38 +0.2
203,020 + MPMX19_02944 0.38 +1.0
203,021 - MPMX19_02944 0.38 +0.1
203,021 - MPMX19_02944 0.38 -0.7
203,021 - MPMX19_02944 0.38 -2.2
203,021 - MPMX19_02944 0.38 -0.6
203,021 - MPMX19_02944 0.38 -0.9
203,021 - MPMX19_02944 0.38 +0.0
203,021 - MPMX19_02944 0.38 -1.2
203,021 - MPMX19_02944 0.38 -1.1
203,021 - MPMX19_02944 0.38 +0.1
203,021 - MPMX19_02944 0.38 -0.2
203,021 - MPMX19_02944 0.38 -2.0
203,021 - MPMX19_02944 0.38 -0.5
203,021 - MPMX19_02944 0.38 -0.2
203,021 - MPMX19_02944 0.38 -0.5
203,021 - MPMX19_02944 0.38 -1.1
203,021 - MPMX19_02944 0.38 +1.3
203,021 - MPMX19_02944 0.38 -0.4
203,021 - MPMX19_02944 0.38 -0.3
203,119 + MPMX19_02944 0.47 +1.1
203,119 + MPMX19_02944 0.47 +1.0
203,119 + MPMX19_02944 0.47 -2.3
203,120 - MPMX19_02944 0.47 -0.7
203,120 - MPMX19_02944 0.47 -1.3
203,120 - MPMX19_02944 0.47 -0.5
203,197 + MPMX19_02944 0.54 -0.2
203,197 + MPMX19_02944 0.54 +0.1
203,198 - MPMX19_02944 0.54 +1.1
203,198 - MPMX19_02944 0.54 +0.4
203,198 - MPMX19_02944 0.54 +0.1

Or see this region's nucleotide sequence