Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02929

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02928 and MPMX19_02929 overlap by 4 nucleotidesMPMX19_02929 and MPMX19_02930 overlap by 4 nucleotides MPMX19_02928: MPMX19_02928 - hypothetical protein, at 182,903 to 183,739 _02928 MPMX19_02929: MPMX19_02929 - hypothetical protein, at 183,736 to 184,644 _02929 MPMX19_02930: MPMX19_02930 - hypothetical protein, at 184,641 to 185,756 _02930 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1at 182.836 kb on + strandat 182.836 kb on + strandat 182.836 kb on + strandat 182.837 kb on - strandat 182.854 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.223 kb on - strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.468 kb on + strand, within MPMX19_02928at 183.624 kb on + strand, within MPMX19_02928at 183.624 kb on + strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.675 kb on + strandat 183.675 kb on + strandat 183.714 kb on + strandat 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.915 kb on - strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.368 kb on - strand, within MPMX19_02929at 184.672 kb on + strandat 184.846 kb on + strand, within MPMX19_02930at 184.846 kb on + strand, within MPMX19_02930at 184.846 kb on + strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 184.847 kb on - strand, within MPMX19_02930at 185.019 kb on + strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.020 kb on - strand, within MPMX19_02930at 185.140 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.263 kb on + strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.264 kb on - strand, within MPMX19_02930at 185.362 kb on - strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.521 kb on + strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.522 kb on - strand, within MPMX19_02930at 185.636 kb on + strand, within MPMX19_02930

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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182,836 + -0.2
182,836 + -0.9
182,836 + -0.5
182,837 - -0.9
182,854 + +0.5
182,967 + -0.6
182,967 + -0.1
182,967 + -0.8
182,967 + -0.1
182,968 - +0.1
182,968 - -1.6
182,968 - +0.7
182,968 - -1.1
182,968 - -1.7
182,968 - +0.2
182,968 - -2.7
183,072 + MPMX19_02928 0.20 +0.3
183,072 + MPMX19_02928 0.20 -0.2
183,072 + MPMX19_02928 0.20 -0.0
183,072 + MPMX19_02928 0.20 -0.2
183,072 + MPMX19_02928 0.20 -1.1
183,072 + MPMX19_02928 0.20 -1.3
183,072 + MPMX19_02928 0.20 -1.3
183,072 + MPMX19_02928 0.20 -1.0
183,072 + MPMX19_02928 0.20 -0.6
183,073 - MPMX19_02928 0.20 -0.7
183,073 - MPMX19_02928 0.20 -1.1
183,073 - MPMX19_02928 0.20 -0.3
183,135 + MPMX19_02928 0.28 -0.9
183,135 + MPMX19_02928 0.28 +0.5
183,135 + MPMX19_02928 0.28 -0.7
183,135 + MPMX19_02928 0.28 +0.1
183,135 + MPMX19_02928 0.28 -0.7
183,135 + MPMX19_02928 0.28 -0.6
183,135 + MPMX19_02928 0.28 +0.6
183,135 + MPMX19_02928 0.28 -0.9
183,135 + MPMX19_02928 0.28 -0.2
183,135 + MPMX19_02928 0.28 -1.2
183,135 + MPMX19_02928 0.28 -0.7
183,135 + MPMX19_02928 0.28 +0.4
183,136 - MPMX19_02928 0.28 +0.4
183,136 - MPMX19_02928 0.28 -1.1
183,136 - MPMX19_02928 0.28 +0.0
183,136 - MPMX19_02928 0.28 -0.9
183,136 - MPMX19_02928 0.28 -1.5
183,136 - MPMX19_02928 0.28 -0.3
183,136 - MPMX19_02928 0.28 -0.7
183,223 - MPMX19_02928 0.38 -2.0
183,365 + MPMX19_02928 0.55 +0.1
183,365 + MPMX19_02928 0.55 -1.9
183,365 + MPMX19_02928 0.55 -0.8
183,365 + MPMX19_02928 0.55 -0.3
183,366 - MPMX19_02928 0.55 -1.1
183,366 - MPMX19_02928 0.55 -0.8
183,366 - MPMX19_02928 0.55 -1.1
183,468 + MPMX19_02928 0.68 -0.3
183,624 + MPMX19_02928 0.86 -1.5
183,624 + MPMX19_02928 0.86 -2.6
183,625 - MPMX19_02928 0.86 +0.1
183,625 - MPMX19_02928 0.86 +0.2
183,625 - MPMX19_02928 0.86 -0.2
183,625 - MPMX19_02928 0.86 -1.9
183,625 - MPMX19_02928 0.86 +0.2
183,675 + +1.4
183,675 + -1.4
183,714 + -0.6
183,914 + MPMX19_02929 0.20 -0.2
183,914 + MPMX19_02929 0.20 -1.3
183,914 + MPMX19_02929 0.20 -2.2
183,914 + MPMX19_02929 0.20 -0.8
183,914 + MPMX19_02929 0.20 -0.7
183,915 - MPMX19_02929 0.20 -2.2
184,124 + MPMX19_02929 0.43 -0.7
184,124 + MPMX19_02929 0.43 +0.7
184,124 + MPMX19_02929 0.43 -0.5
184,124 + MPMX19_02929 0.43 +0.5
184,125 - MPMX19_02929 0.43 -0.1
184,125 - MPMX19_02929 0.43 -1.0
184,125 - MPMX19_02929 0.43 -0.2
184,125 - MPMX19_02929 0.43 -1.1
184,127 + MPMX19_02929 0.43 -0.8
184,127 + MPMX19_02929 0.43 -1.3
184,127 + MPMX19_02929 0.43 -1.3
184,127 + MPMX19_02929 0.43 +0.0
184,127 + MPMX19_02929 0.43 +0.8
184,127 + MPMX19_02929 0.43 -1.1
184,127 + MPMX19_02929 0.43 -0.5
184,127 + MPMX19_02929 0.43 -1.1
184,128 - MPMX19_02929 0.43 +0.8
184,128 - MPMX19_02929 0.43 -0.8
184,367 + MPMX19_02929 0.69 +0.0
184,367 + MPMX19_02929 0.69 -0.1
184,367 + MPMX19_02929 0.69 +0.4
184,367 + MPMX19_02929 0.69 -1.1
184,368 - MPMX19_02929 0.70 -0.5
184,672 + -1.5
184,846 + MPMX19_02930 0.18 +0.2
184,846 + MPMX19_02930 0.18 -0.5
184,846 + MPMX19_02930 0.18 -1.5
184,847 - MPMX19_02930 0.18 -0.3
184,847 - MPMX19_02930 0.18 -2.3
184,847 - MPMX19_02930 0.18 -0.8
184,847 - MPMX19_02930 0.18 +0.0
185,019 + MPMX19_02930 0.34 -0.1
185,020 - MPMX19_02930 0.34 -1.3
185,020 - MPMX19_02930 0.34 +0.4
185,020 - MPMX19_02930 0.34 -0.8
185,140 + MPMX19_02930 0.45 +0.8
185,263 + MPMX19_02930 0.56 -0.7
185,263 + MPMX19_02930 0.56 -1.1
185,263 + MPMX19_02930 0.56 -1.3
185,263 + MPMX19_02930 0.56 -2.1
185,263 + MPMX19_02930 0.56 -2.3
185,263 + MPMX19_02930 0.56 +0.5
185,263 + MPMX19_02930 0.56 +0.5
185,264 - MPMX19_02930 0.56 +0.3
185,264 - MPMX19_02930 0.56 -1.0
185,264 - MPMX19_02930 0.56 -0.2
185,264 - MPMX19_02930 0.56 -0.5
185,264 - MPMX19_02930 0.56 +0.7
185,362 - MPMX19_02930 0.65 -1.8
185,521 + MPMX19_02930 0.79 -0.2
185,521 + MPMX19_02930 0.79 +1.7
185,521 + MPMX19_02930 0.79 -0.7
185,521 + MPMX19_02930 0.79 -0.7
185,521 + MPMX19_02930 0.79 -0.3
185,521 + MPMX19_02930 0.79 -1.6
185,521 + MPMX19_02930 0.79 -1.0
185,522 - MPMX19_02930 0.79 -0.2
185,522 - MPMX19_02930 0.79 -0.2
185,522 - MPMX19_02930 0.79 -0.5
185,522 - MPMX19_02930 0.79 +0.1
185,522 - MPMX19_02930 0.79 -0.4
185,636 + MPMX19_02930 0.89 -2.5

Or see this region's nucleotide sequence