Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02922

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02921 and MPMX19_02922 overlap by 1 nucleotidesMPMX19_02922 and MPMX19_02923 overlap by 4 nucleotidesMPMX19_02923 and MPMX19_02924 overlap by 26 nucleotides MPMX19_02921: MPMX19_02921 - Formyltransferase/hydrolase complex Fhc subunit A, at 175,390 to 177,066 _02921 MPMX19_02922: MPMX19_02922 - Formyltransferase/hydrolase complex subunit D, at 177,066 to 177,989 _02922 MPMX19_02923: MPMX19_02923 - Formyltransferase/hydrolase complex Fhc subunit C, at 177,986 to 178,741 _02923 MPMX19_02924: MPMX19_02924 - hypothetical protein, at 178,716 to 179,981 _02924 Position (kb) 177 178Strain fitness (log2 ratio) -2 -1 0 1at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.451 kb on + strand, within MPMX19_02921at 176.452 kb on - strand, within MPMX19_02921at 176.452 kb on - strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.532 kb on - strand, within MPMX19_02921at 176.570 kb on - strand, within MPMX19_02921at 176.570 kb on - strand, within MPMX19_02921at 176.788 kb on + strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.387 kb on + strand, within MPMX19_02922at 177.387 kb on + strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.441 kb on + strand, within MPMX19_02922at 177.442 kb on - strand, within MPMX19_02922at 177.442 kb on - strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 178.454 kb on + strand, within MPMX19_02923at 178.756 kb on + strandat 178.756 kb on + strandat 178.756 kb on + strandat 178.756 kb on + strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.881 kb on + strand, within MPMX19_02924at 178.882 kb on - strand, within MPMX19_02924at 178.882 kb on - strand, within MPMX19_02924

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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176,212 + MPMX19_02921 0.49 -0.1
176,212 + MPMX19_02921 0.49 +0.2
176,212 + MPMX19_02921 0.49 +0.7
176,212 + MPMX19_02921 0.49 -0.1
176,213 - MPMX19_02921 0.49 +0.5
176,213 - MPMX19_02921 0.49 -0.5
176,213 - MPMX19_02921 0.49 -0.4
176,213 - MPMX19_02921 0.49 -0.7
176,213 - MPMX19_02921 0.49 -0.8
176,451 + MPMX19_02921 0.63 -1.5
176,452 - MPMX19_02921 0.63 -0.3
176,452 - MPMX19_02921 0.63 -0.6
176,458 + MPMX19_02921 0.64 -0.1
176,458 + MPMX19_02921 0.64 -0.8
176,458 + MPMX19_02921 0.64 -1.5
176,458 + MPMX19_02921 0.64 +0.3
176,458 + MPMX19_02921 0.64 +0.7
176,459 - MPMX19_02921 0.64 -1.5
176,459 - MPMX19_02921 0.64 -1.0
176,459 - MPMX19_02921 0.64 -0.3
176,459 - MPMX19_02921 0.64 -0.8
176,459 - MPMX19_02921 0.64 +0.4
176,532 - MPMX19_02921 0.68 -1.3
176,570 - MPMX19_02921 0.70 -1.2
176,570 - MPMX19_02921 0.70 -0.7
176,788 + MPMX19_02921 0.83 -0.7
176,789 - MPMX19_02921 0.83 -0.7
176,789 - MPMX19_02921 0.83 +1.2
176,789 - MPMX19_02921 0.83 +0.1
177,132 + +0.4
177,132 + +0.0
177,132 + -0.1
177,132 + -0.0
177,132 + -0.5
177,132 + -1.6
177,132 + +0.2
177,132 + -0.1
177,133 - -0.6
177,133 - -0.5
177,133 - -1.9
177,133 - +0.7
177,133 - +1.7
177,133 - -0.8
177,133 - -0.1
177,133 - -1.0
177,133 - -1.2
177,133 - +0.9
177,387 + MPMX19_02922 0.35 -2.0
177,387 + MPMX19_02922 0.35 -0.3
177,388 - MPMX19_02922 0.35 +0.4
177,388 - MPMX19_02922 0.35 -0.3
177,388 - MPMX19_02922 0.35 -1.2
177,441 + MPMX19_02922 0.41 -0.3
177,442 - MPMX19_02922 0.41 -1.0
177,442 - MPMX19_02922 0.41 +0.4
177,708 + MPMX19_02922 0.69 -2.6
177,708 + MPMX19_02922 0.69 -0.6
177,708 + MPMX19_02922 0.69 +0.3
177,708 + MPMX19_02922 0.69 -2.1
177,708 + MPMX19_02922 0.69 -1.2
177,708 + MPMX19_02922 0.69 +0.3
177,708 + MPMX19_02922 0.69 -0.6
177,708 + MPMX19_02922 0.69 -2.1
177,709 - MPMX19_02922 0.70 -0.7
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 +0.9
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 -0.1
177,709 - MPMX19_02922 0.70 +0.3
177,709 - MPMX19_02922 0.70 +1.2
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 -0.8
178,454 + MPMX19_02923 0.62 -1.5
178,756 + +0.6
178,756 + -1.3
178,756 + +0.9
178,756 + -1.3
178,757 - -0.5
178,757 - -0.4
178,757 - -0.4
178,757 - -0.2
178,881 + MPMX19_02924 0.13 -0.1
178,882 - MPMX19_02924 0.13 -0.4
178,882 - MPMX19_02924 0.13 -0.9

Or see this region's nucleotide sequence