Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02902

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02901 and MPMX19_02902 overlap by 4 nucleotidesMPMX19_02902 and MPMX19_02903 overlap by 4 nucleotidesMPMX19_02903 and MPMX19_02904 overlap by 4 nucleotides MPMX19_02901: MPMX19_02901 - hypothetical protein, at 158,462 to 159,835 _02901 MPMX19_02902: MPMX19_02902 - hypothetical protein, at 159,832 to 160,383 _02902 MPMX19_02903: MPMX19_02903 - hypothetical protein, at 160,380 to 160,913 _02903 MPMX19_02904: MPMX19_02904 - hypothetical protein, at 160,910 to 161,977 _02904 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1at 158.882 kb on + strand, within MPMX19_02901at 158.882 kb on + strand, within MPMX19_02901at 158.882 kb on + strand, within MPMX19_02901at 158.883 kb on - strand, within MPMX19_02901at 158.888 kb on + strand, within MPMX19_02901at 158.889 kb on - strand, within MPMX19_02901at 158.889 kb on - strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.975 kb on + strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 158.976 kb on - strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.002 kb on + strand, within MPMX19_02901at 159.003 kb on - strand, within MPMX19_02901at 159.003 kb on - strand, within MPMX19_02901at 159.003 kb on - strand, within MPMX19_02901at 159.003 kb on - strand, within MPMX19_02901at 159.003 kb on - strand, within MPMX19_02901at 159.004 kb on + strand, within MPMX19_02901at 159.005 kb on - strand, within MPMX19_02901at 159.072 kb on - strand, within MPMX19_02901at 159.134 kb on + strand, within MPMX19_02901at 159.134 kb on + strand, within MPMX19_02901at 159.134 kb on + strand, within MPMX19_02901at 159.135 kb on - strand, within MPMX19_02901at 159.401 kb on + strand, within MPMX19_02901at 159.401 kb on + strand, within MPMX19_02901at 159.401 kb on + strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.402 kb on - strand, within MPMX19_02901at 159.407 kb on + strand, within MPMX19_02901at 159.407 kb on + strand, within MPMX19_02901at 159.408 kb on - strand, within MPMX19_02901at 159.408 kb on - strand, within MPMX19_02901at 159.408 kb on - strand, within MPMX19_02901at 159.408 kb on - strand, within MPMX19_02901at 159.408 kb on - strand, within MPMX19_02901at 159.435 kb on - strand, within MPMX19_02901at 159.488 kb on + strand, within MPMX19_02901at 159.488 kb on + strand, within MPMX19_02901at 159.489 kb on - strand, within MPMX19_02901at 159.489 kb on - strand, within MPMX19_02901at 159.489 kb on - strand, within MPMX19_02901at 159.489 kb on - strand, within MPMX19_02901at 159.501 kb on - strand, within MPMX19_02901at 159.626 kb on + strand, within MPMX19_02901at 159.626 kb on + strand, within MPMX19_02901at 159.626 kb on + strand, within MPMX19_02901at 159.687 kb on + strand, within MPMX19_02901at 159.688 kb on - strand, within MPMX19_02901at 159.688 kb on - strand, within MPMX19_02901at 159.688 kb on - strand, within MPMX19_02901at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.956 kb on - strand, within MPMX19_02902at 160.073 kb on - strand, within MPMX19_02902at 160.093 kb on + strand, within MPMX19_02902at 160.229 kb on - strand, within MPMX19_02902at 160.229 kb on - strand, within MPMX19_02902at 160.623 kb on + strand, within MPMX19_02903at 160.624 kb on - strand, within MPMX19_02903at 160.624 kb on - strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.654 kb on - strand, within MPMX19_02903at 160.752 kb on + strand, within MPMX19_02903at 160.753 kb on - strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.836 kb on + strand, within MPMX19_02903at 160.836 kb on + strand, within MPMX19_02903at 160.837 kb on - strand, within MPMX19_02903at 160.927 kb on + strandat 160.951 kb on + strandat 160.952 kb on - strandat 160.952 kb on - strandat 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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158,882 + MPMX19_02901 0.31 -1.7
158,882 + MPMX19_02901 0.31 -0.1
158,882 + MPMX19_02901 0.31 -0.7
158,883 - MPMX19_02901 0.31 -0.5
158,888 + MPMX19_02901 0.31 -0.5
158,889 - MPMX19_02901 0.31 -0.1
158,889 - MPMX19_02901 0.31 -0.3
158,975 + MPMX19_02901 0.37 -0.3
158,975 + MPMX19_02901 0.37 +0.5
158,975 + MPMX19_02901 0.37 -0.5
158,975 + MPMX19_02901 0.37 +1.1
158,975 + MPMX19_02901 0.37 -2.0
158,975 + MPMX19_02901 0.37 -1.4
158,975 + MPMX19_02901 0.37 -1.0
158,976 - MPMX19_02901 0.37 -0.2
158,976 - MPMX19_02901 0.37 -0.8
158,976 - MPMX19_02901 0.37 +1.0
158,976 - MPMX19_02901 0.37 +0.3
158,976 - MPMX19_02901 0.37 -0.3
158,976 - MPMX19_02901 0.37 +0.7
158,976 - MPMX19_02901 0.37 -0.3
158,976 - MPMX19_02901 0.37 -1.9
159,002 + MPMX19_02901 0.39 -1.3
159,002 + MPMX19_02901 0.39 -0.5
159,002 + MPMX19_02901 0.39 -0.7
159,002 + MPMX19_02901 0.39 -0.7
159,002 + MPMX19_02901 0.39 -0.9
159,002 + MPMX19_02901 0.39 -0.5
159,002 + MPMX19_02901 0.39 +0.7
159,002 + MPMX19_02901 0.39 +0.5
159,003 - MPMX19_02901 0.39 -0.6
159,003 - MPMX19_02901 0.39 -1.8
159,003 - MPMX19_02901 0.39 -1.2
159,003 - MPMX19_02901 0.39 -1.1
159,003 - MPMX19_02901 0.39 -1.7
159,004 + MPMX19_02901 0.39 -0.5
159,005 - MPMX19_02901 0.40 -0.9
159,072 - MPMX19_02901 0.44 -0.0
159,134 + MPMX19_02901 0.49 +0.2
159,134 + MPMX19_02901 0.49 -1.0
159,134 + MPMX19_02901 0.49 -2.4
159,135 - MPMX19_02901 0.49 -0.1
159,401 + MPMX19_02901 0.68 -0.7
159,401 + MPMX19_02901 0.68 +0.3
159,401 + MPMX19_02901 0.68 -0.7
159,402 - MPMX19_02901 0.68 -0.2
159,402 - MPMX19_02901 0.68 -1.1
159,402 - MPMX19_02901 0.68 +1.1
159,402 - MPMX19_02901 0.68 -0.2
159,402 - MPMX19_02901 0.68 +0.7
159,402 - MPMX19_02901 0.68 -0.8
159,407 + MPMX19_02901 0.69 -1.0
159,407 + MPMX19_02901 0.69 +0.5
159,408 - MPMX19_02901 0.69 +0.3
159,408 - MPMX19_02901 0.69 -1.1
159,408 - MPMX19_02901 0.69 -1.7
159,408 - MPMX19_02901 0.69 +0.3
159,408 - MPMX19_02901 0.69 -0.9
159,435 - MPMX19_02901 0.71 +0.4
159,488 + MPMX19_02901 0.75 -1.3
159,488 + MPMX19_02901 0.75 +0.7
159,489 - MPMX19_02901 0.75 -0.8
159,489 - MPMX19_02901 0.75 -0.7
159,489 - MPMX19_02901 0.75 -0.5
159,489 - MPMX19_02901 0.75 +0.5
159,501 - MPMX19_02901 0.76 +1.2
159,626 + MPMX19_02901 0.85 +0.7
159,626 + MPMX19_02901 0.85 -0.1
159,626 + MPMX19_02901 0.85 +0.5
159,687 + MPMX19_02901 0.89 -2.2
159,688 - MPMX19_02901 0.89 -1.7
159,688 - MPMX19_02901 0.89 +0.5
159,688 - MPMX19_02901 0.89 -0.4
159,955 + MPMX19_02902 0.22 -1.1
159,955 + MPMX19_02902 0.22 -0.9
159,955 + MPMX19_02902 0.22 -1.6
159,955 + MPMX19_02902 0.22 +0.5
159,956 - MPMX19_02902 0.22 -0.9
160,073 - MPMX19_02902 0.44 -0.5
160,093 + MPMX19_02902 0.47 -0.2
160,229 - MPMX19_02902 0.72 +0.1
160,229 - MPMX19_02902 0.72 -1.2
160,623 + MPMX19_02903 0.46 +0.2
160,624 - MPMX19_02903 0.46 -1.3
160,624 - MPMX19_02903 0.46 +1.2
160,632 + MPMX19_02903 0.47 -0.2
160,632 + MPMX19_02903 0.47 +1.1
160,632 + MPMX19_02903 0.47 -0.9
160,632 + MPMX19_02903 0.47 +0.3
160,632 + MPMX19_02903 0.47 -0.3
160,632 + MPMX19_02903 0.47 +0.1
160,632 + MPMX19_02903 0.47 -0.0
160,633 - MPMX19_02903 0.47 -1.8
160,633 - MPMX19_02903 0.47 -1.2
160,633 - MPMX19_02903 0.47 -2.3
160,633 - MPMX19_02903 0.47 -0.2
160,633 - MPMX19_02903 0.47 +0.1
160,654 - MPMX19_02903 0.51 -0.5
160,752 + MPMX19_02903 0.70 -0.2
160,753 - MPMX19_02903 0.70 -0.6
160,785 + MPMX19_02903 0.76 -0.6
160,785 + MPMX19_02903 0.76 -0.2
160,785 + MPMX19_02903 0.76 -1.3
160,785 + MPMX19_02903 0.76 -0.3
160,785 + MPMX19_02903 0.76 -0.5
160,785 + MPMX19_02903 0.76 -0.5
160,785 + MPMX19_02903 0.76 +0.2
160,785 + MPMX19_02903 0.76 -0.1
160,785 + MPMX19_02903 0.76 -0.3
160,785 + MPMX19_02903 0.76 -0.1
160,785 + MPMX19_02903 0.76 -1.4
160,785 + MPMX19_02903 0.76 -2.7
160,785 + MPMX19_02903 0.76 -0.9
160,785 + MPMX19_02903 0.76 -1.6
160,785 + MPMX19_02903 0.76 -1.3
160,785 + MPMX19_02903 0.76 -1.3
160,785 + MPMX19_02903 0.76 +0.7
160,785 + MPMX19_02903 0.76 -1.7
160,785 + MPMX19_02903 0.76 -1.2
160,785 + MPMX19_02903 0.76 -0.9
160,785 + MPMX19_02903 0.76 -0.0
160,785 + MPMX19_02903 0.76 -1.6
160,785 + MPMX19_02903 0.76 +1.1
160,785 + MPMX19_02903 0.76 +0.7
160,785 + MPMX19_02903 0.76 -1.8
160,786 - MPMX19_02903 0.76 -0.7
160,786 - MPMX19_02903 0.76 -0.8
160,786 - MPMX19_02903 0.76 -0.3
160,786 - MPMX19_02903 0.76 -0.3
160,786 - MPMX19_02903 0.76 -2.0
160,786 - MPMX19_02903 0.76 -0.9
160,786 - MPMX19_02903 0.76 +0.4
160,786 - MPMX19_02903 0.76 -2.0
160,786 - MPMX19_02903 0.76 -1.5
160,786 - MPMX19_02903 0.76 +0.3
160,786 - MPMX19_02903 0.76 -2.2
160,786 - MPMX19_02903 0.76 +0.7
160,786 - MPMX19_02903 0.76 +1.2
160,792 - MPMX19_02903 0.77 -1.2
160,792 - MPMX19_02903 0.77 -0.8
160,792 - MPMX19_02903 0.77 -1.3
160,836 + MPMX19_02903 0.85 -0.8
160,836 + MPMX19_02903 0.85 +0.1
160,837 - MPMX19_02903 0.86 -0.2
160,927 + -0.7
160,951 + -0.5
160,952 - +0.1
160,952 - -1.5
161,195 + MPMX19_02904 0.27 +0.1
161,195 + MPMX19_02904 0.27 -2.3
161,195 + MPMX19_02904 0.27 -0.5
161,195 + MPMX19_02904 0.27 -0.6
161,196 - MPMX19_02904 0.27 -0.6
161,196 - MPMX19_02904 0.27 +0.2
161,196 - MPMX19_02904 0.27 -1.2
161,196 - MPMX19_02904 0.27 -1.7
161,196 - MPMX19_02904 0.27 -1.3
161,196 - MPMX19_02904 0.27 -2.0
161,196 - MPMX19_02904 0.27 -0.8
161,264 + MPMX19_02904 0.33 -1.5
161,264 + MPMX19_02904 0.33 -0.8
161,264 + MPMX19_02904 0.33 -0.3
161,264 + MPMX19_02904 0.33 -0.6
161,264 + MPMX19_02904 0.33 -0.6
161,265 - MPMX19_02904 0.33 +1.7
161,265 - MPMX19_02904 0.33 +0.7
161,282 + MPMX19_02904 0.35 +0.2
161,282 + MPMX19_02904 0.35 -0.2
161,282 + MPMX19_02904 0.35 +1.2
161,282 + MPMX19_02904 0.35 +0.2
161,282 + MPMX19_02904 0.35 -2.0
161,283 - MPMX19_02904 0.35 +0.7
161,283 - MPMX19_02904 0.35 -0.9
161,283 - MPMX19_02904 0.35 +0.5
161,283 - MPMX19_02904 0.35 -1.2
161,283 - MPMX19_02904 0.35 -1.3

Or see this region's nucleotide sequence