Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02878

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02877 and MPMX19_02878 are separated by 129 nucleotidesMPMX19_02878 and MPMX19_02879 are separated by 160 nucleotides MPMX19_02877: MPMX19_02877 - ATP-dependent RecD-like DNA helicase, at 126,931 to 128,133 _02877 MPMX19_02878: MPMX19_02878 - hypothetical protein, at 128,263 to 129,237 _02878 MPMX19_02879: MPMX19_02879 - Pyridoxal 4-dehydrogenase, at 129,398 to 130,384 _02879 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.662 kb on + strand, within MPMX19_02877at 127.697 kb on + strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.201 kb on + strandat 128.201 kb on + strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.259 kb on - strandat 128.275 kb on + strandat 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.642 kb on - strand, within MPMX19_02878at 128.890 kb on - strand, within MPMX19_02878at 128.908 kb on + strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.929 kb on + strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.287 kb on + strandat 129.287 kb on + strandat 129.287 kb on + strandat 129.288 kb on - strandat 129.288 kb on - strandat 129.530 kb on - strand, within MPMX19_02879at 129.530 kb on - strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.780 kb on + strand, within MPMX19_02879at 129.781 kb on - strand, within MPMX19_02879at 129.781 kb on - strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.983 kb on - strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 130.059 kb on + strand, within MPMX19_02879at 130.059 kb on + strand, within MPMX19_02879at 130.060 kb on - strand, within MPMX19_02879at 130.066 kb on - strand, within MPMX19_02879at 130.227 kb on + strand, within MPMX19_02879at 130.228 kb on - strand, within MPMX19_02879

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
127,442 + MPMX19_02877 0.42 -0.3
127,442 + MPMX19_02877 0.42 -1.3
127,442 + MPMX19_02877 0.42 +0.3
127,442 + MPMX19_02877 0.42 -0.9
127,442 + MPMX19_02877 0.42 +1.1
127,442 + MPMX19_02877 0.42 -1.0
127,443 - MPMX19_02877 0.43 -0.0
127,443 - MPMX19_02877 0.43 +0.7
127,443 - MPMX19_02877 0.43 -0.5
127,443 - MPMX19_02877 0.43 +0.3
127,443 - MPMX19_02877 0.43 -0.1
127,443 - MPMX19_02877 0.43 +0.1
127,443 - MPMX19_02877 0.43 -1.3
127,662 + MPMX19_02877 0.61 +0.7
127,697 + MPMX19_02877 0.64 -0.5
127,698 - MPMX19_02877 0.64 -0.8
127,698 - MPMX19_02877 0.64 -2.0
127,698 - MPMX19_02877 0.64 -0.2
127,698 - MPMX19_02877 0.64 -0.7
127,868 + MPMX19_02877 0.78 -1.6
127,868 + MPMX19_02877 0.78 -0.9
127,868 + MPMX19_02877 0.78 -1.5
127,869 - MPMX19_02877 0.78 -1.6
127,869 - MPMX19_02877 0.78 -0.6
127,869 - MPMX19_02877 0.78 +1.2
127,869 - MPMX19_02877 0.78 -0.9
127,955 + MPMX19_02877 0.85 +0.7
127,955 + MPMX19_02877 0.85 -1.5
127,955 + MPMX19_02877 0.85 -1.2
127,955 + MPMX19_02877 0.85 -0.5
127,955 + MPMX19_02877 0.85 +0.2
127,955 + MPMX19_02877 0.85 +0.6
127,955 + MPMX19_02877 0.85 -2.3
127,955 + MPMX19_02877 0.85 +0.4
127,955 + MPMX19_02877 0.85 -2.5
127,955 + MPMX19_02877 0.85 -0.5
127,955 + MPMX19_02877 0.85 -0.8
127,955 + MPMX19_02877 0.85 +0.1
127,955 + MPMX19_02877 0.85 -0.5
127,956 - MPMX19_02877 0.85 -1.2
127,956 - MPMX19_02877 0.85 +0.3
127,956 - MPMX19_02877 0.85 -0.1
127,956 - MPMX19_02877 0.85 -0.2
127,956 - MPMX19_02877 0.85 -1.0
127,956 - MPMX19_02877 0.85 -1.6
127,956 - MPMX19_02877 0.85 -0.0
127,956 - MPMX19_02877 0.85 +1.1
127,956 - MPMX19_02877 0.85 +0.7
127,956 - MPMX19_02877 0.85 +0.7
127,956 - MPMX19_02877 0.85 -0.3
127,956 - MPMX19_02877 0.85 -1.3
127,956 - MPMX19_02877 0.85 +0.3
128,072 + -2.8
128,072 + +0.7
128,072 + -0.9
128,072 + -0.2
128,072 + -1.2
128,072 + -0.3
128,072 + +0.7
128,073 - -1.3
128,073 - +0.0
128,073 - -0.4
128,073 - -0.7
128,073 - +0.5
128,073 - -1.0
128,073 - -2.4
128,201 + -0.7
128,201 + +0.4
128,202 - -1.5
128,202 - -1.7
128,202 - -1.2
128,202 - -0.1
128,202 - -2.3
128,202 - -2.4
128,202 - -0.2
128,202 - -1.2
128,259 - -1.2
128,275 + +0.1
128,641 + MPMX19_02878 0.39 -0.9
128,641 + MPMX19_02878 0.39 -0.5
128,641 + MPMX19_02878 0.39 -2.3
128,641 + MPMX19_02878 0.39 -0.4
128,641 + MPMX19_02878 0.39 -0.8
128,641 + MPMX19_02878 0.39 -1.0
128,642 - MPMX19_02878 0.39 +0.1
128,890 - MPMX19_02878 0.64 -0.3
128,908 + MPMX19_02878 0.66 -0.0
128,909 - MPMX19_02878 0.66 -2.8
128,909 - MPMX19_02878 0.66 -1.8
128,929 + MPMX19_02878 0.68 -0.3
128,930 - MPMX19_02878 0.68 -0.1
128,930 - MPMX19_02878 0.68 -1.5
129,007 + MPMX19_02878 0.76 +0.6
129,007 + MPMX19_02878 0.76 +0.5
129,008 - MPMX19_02878 0.76 -0.9
129,008 - MPMX19_02878 0.76 -0.9
129,008 - MPMX19_02878 0.76 -1.5
129,008 - MPMX19_02878 0.76 -0.5
129,008 - MPMX19_02878 0.76 -0.7
129,287 + -1.5
129,287 + -0.3
129,287 + -0.2
129,288 - -0.7
129,288 - -1.5
129,530 - MPMX19_02879 0.13 -0.4
129,530 - MPMX19_02879 0.13 -0.3
129,696 + MPMX19_02879 0.30 -0.0
129,696 + MPMX19_02879 0.30 +3.0
129,696 + MPMX19_02879 0.30 +1.1
129,696 + MPMX19_02879 0.30 -0.9
129,696 + MPMX19_02879 0.30 -1.8
129,696 + MPMX19_02879 0.30 +0.1
129,696 + MPMX19_02879 0.30 -0.7
129,697 - MPMX19_02879 0.30 +0.8
129,697 - MPMX19_02879 0.30 +0.2
129,697 - MPMX19_02879 0.30 -0.5
129,697 - MPMX19_02879 0.30 -0.9
129,697 - MPMX19_02879 0.30 +0.7
129,697 - MPMX19_02879 0.30 -0.3
129,780 + MPMX19_02879 0.39 -1.7
129,781 - MPMX19_02879 0.39 -0.9
129,781 - MPMX19_02879 0.39 +0.2
129,800 + MPMX19_02879 0.41 +0.3
129,800 + MPMX19_02879 0.41 +0.6
129,800 + MPMX19_02879 0.41 -1.5
129,800 + MPMX19_02879 0.41 +1.2
129,800 + MPMX19_02879 0.41 +1.0
129,800 + MPMX19_02879 0.41 +0.7
129,800 + MPMX19_02879 0.41 +1.7
129,800 + MPMX19_02879 0.41 +0.3
129,800 + MPMX19_02879 0.41 -0.7
129,800 + MPMX19_02879 0.41 +0.1
129,800 + MPMX19_02879 0.41 -1.3
129,800 + MPMX19_02879 0.41 -0.4
129,800 + MPMX19_02879 0.41 -0.9
129,801 - MPMX19_02879 0.41 -0.5
129,801 - MPMX19_02879 0.41 -2.0
129,801 - MPMX19_02879 0.41 -0.9
129,801 - MPMX19_02879 0.41 -1.3
129,801 - MPMX19_02879 0.41 +0.9
129,801 - MPMX19_02879 0.41 -1.9
129,801 - MPMX19_02879 0.41 +0.7
129,801 - MPMX19_02879 0.41 -1.1
129,801 - MPMX19_02879 0.41 +0.4
129,801 - MPMX19_02879 0.41 -0.4
129,983 - MPMX19_02879 0.59 +0.7
129,984 + MPMX19_02879 0.59 +2.1
129,984 + MPMX19_02879 0.59 -1.1
129,984 + MPMX19_02879 0.59 +0.1
129,984 + MPMX19_02879 0.59 -1.1
129,984 + MPMX19_02879 0.59 -1.3
129,984 + MPMX19_02879 0.59 -0.1
129,984 + MPMX19_02879 0.59 +0.7
129,984 + MPMX19_02879 0.59 -0.2
129,984 + MPMX19_02879 0.59 +0.1
129,984 + MPMX19_02879 0.59 -0.3
129,984 + MPMX19_02879 0.59 -0.2
129,984 + MPMX19_02879 0.59 -2.5
129,984 + MPMX19_02879 0.59 -0.5
129,984 + MPMX19_02879 0.59 -3.0
129,984 + MPMX19_02879 0.59 -0.7
129,985 - MPMX19_02879 0.59 -1.2
129,985 - MPMX19_02879 0.59 +0.5
129,985 - MPMX19_02879 0.59 -0.2
129,985 - MPMX19_02879 0.59 -0.4
129,985 - MPMX19_02879 0.59 -0.2
129,985 - MPMX19_02879 0.59 +0.1
129,985 - MPMX19_02879 0.59 -1.8
129,985 - MPMX19_02879 0.59 -1.3
129,985 - MPMX19_02879 0.59 -0.7
129,985 - MPMX19_02879 0.59 -2.3
129,985 - MPMX19_02879 0.59 -1.4
130,059 + MPMX19_02879 0.67 -0.1
130,059 + MPMX19_02879 0.67 -1.7
130,060 - MPMX19_02879 0.67 +1.1
130,066 - MPMX19_02879 0.68 -0.1
130,227 + MPMX19_02879 0.84 -0.5
130,228 - MPMX19_02879 0.84 +1.2

Or see this region's nucleotide sequence